Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1192
(425 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein. 64 2e-10
BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36 p... 64 2e-10
BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36 p... 64 2e-10
BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36 p... 64 2e-10
AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36 p... 64 2e-10
AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36 p... 49 6e-06
U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein ... 29 5.0
CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein. 29 5.0
BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein pr... 29 5.0
BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protei... 29 5.0
AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protei... 29 5.0
AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protei... 29 5.0
L34600-1|AAA67038.1| 727|Homo sapiens initiation factor 2 protein. 29 6.6
AF495546-1|AAM70196.1| 727|Homo sapiens translation initiation ... 29 6.6
AF494407-1|AAM14617.1| 727|Homo sapiens mitochondrial translati... 29 6.6
>CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein.
Length = 105
Score = 64.1 bits (149), Expect = 2e-10
Identities = 35/69 (50%), Positives = 44/69 (63%)
Frame = +3
Query: 24 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 203
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 204 AQYEKRAME 230
A YE+RAME
Sbjct: 51 APYERRAME 59
Score = 59.7 bits (138), Expect = 4e-09
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = +2
Query: 245 KRQGALKFLKRRLGTHIRAKRKREELSNVLAQMRK 349
K + ALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 64.1 bits (149), Expect = 2e-10
Identities = 35/69 (50%), Positives = 44/69 (63%)
Frame = +3
Query: 24 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 203
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 204 AQYEKRAME 230
A YE+RAME
Sbjct: 51 APYERRAME 59
Score = 59.7 bits (138), Expect = 4e-09
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = +2
Query: 245 KRQGALKFLKRRLGTHIRAKRKREELSNVLAQMRK 349
K + ALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 64.1 bits (149), Expect = 2e-10
Identities = 35/69 (50%), Positives = 44/69 (63%)
Frame = +3
Query: 24 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 203
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 204 AQYEKRAME 230
A YE+RAME
Sbjct: 51 APYERRAME 59
Score = 59.7 bits (138), Expect = 4e-09
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = +2
Query: 245 KRQGALKFLKRRLGTHIRAKRKREELSNVLAQMRK 349
K + ALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 64.1 bits (149), Expect = 2e-10
Identities = 35/69 (50%), Positives = 44/69 (63%)
Frame = +3
Query: 24 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 203
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 204 AQYEKRAME 230
A YE+RAME
Sbjct: 51 APYERRAME 59
Score = 59.7 bits (138), Expect = 4e-09
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = +2
Query: 245 KRQGALKFLKRRLGTHIRAKRKREELSNVLAQMRK 349
K + ALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 64.1 bits (149), Expect = 2e-10
Identities = 35/69 (50%), Positives = 44/69 (63%)
Frame = +3
Query: 24 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 203
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 204 AQYEKRAME 230
A YE+RAME
Sbjct: 51 APYERRAME 59
Score = 59.7 bits (138), Expect = 4e-09
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = +2
Query: 245 KRQGALKFLKRRLGTHIRAKRKREELSNVLAQMRK 349
K + ALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36
protein.
Length = 32
Score = 49.2 bits (112), Expect = 6e-06
Identities = 22/28 (78%), Positives = 26/28 (92%)
Frame = +2
Query: 245 KRQGALKFLKRRLGTHIRAKRKREELSN 328
K + ALKF+K+R+GTHIRAKRKREELSN
Sbjct: 5 KDKRALKFIKKRVGTHIRAKRKREELSN 32
>U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein 8
protein.
Length = 400
Score = 29.5 bits (63), Expect = 5.0
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 78 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 230
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303
>CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein.
Length = 405
Score = 29.5 bits (63), Expect = 5.0
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 78 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 230
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein
protein.
Length = 400
Score = 29.5 bits (63), Expect = 5.0
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 78 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 230
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303
>BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protein 8
protein.
Length = 405
Score = 29.5 bits (63), Expect = 5.0
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 78 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 230
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protein 8
protein.
Length = 405
Score = 29.5 bits (63), Expect = 5.0
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 78 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 230
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protein 8
variant protein.
Length = 481
Score = 29.5 bits (63), Expect = 5.0
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 78 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 230
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 294 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 343
>L34600-1|AAA67038.1| 727|Homo sapiens initiation factor 2 protein.
Length = 727
Score = 29.1 bits (62), Expect = 6.6
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 245 KRQGALKFLKRRLGTHIRAKRKREELSNVLAQMRK 349
K++ L+FL+R+ ++ K KRE SNVL+ + K
Sbjct: 487 KKRSILRFLERKEQIPLKPKEKRERDSNVLSVIIK 521
>AF495546-1|AAM70196.1| 727|Homo sapiens translation initiation
factor 2 protein.
Length = 727
Score = 29.1 bits (62), Expect = 6.6
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 245 KRQGALKFLKRRLGTHIRAKRKREELSNVLAQMRK 349
K++ L+FL+R+ ++ K KRE SNVL+ + K
Sbjct: 487 KKRSILRFLERKEQIPLKPKEKRERDSNVLSVIIK 521
>AF494407-1|AAM14617.1| 727|Homo sapiens mitochondrial
translation-initiation factor 2 protein.
Length = 727
Score = 29.1 bits (62), Expect = 6.6
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 245 KRQGALKFLKRRLGTHIRAKRKREELSNVLAQMRK 349
K++ L+FL+R+ ++ K KRE SNVL+ + K
Sbjct: 487 KKRSILRFLERKEQIPLKPKEKRERDSNVLSVIIK 521
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,754,030
Number of Sequences: 237096
Number of extensions: 875039
Number of successful extensions: 5567
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5562
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3316445452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -