Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1192
         (425 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...    50   7e-07
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen...    27   5.6  
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st...    27   5.6  
Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical pr...    26   9.8  
AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.      26   9.8  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score = 50.0 bits (114), Expect = 7e-07
 Identities = 24/35 (68%), Positives = 27/35 (77%)
 Frame = +2

Query: 245 KRQGALKFLKRRLGTHIRAKRKREELSNVLAQMRK 349
           K + ALKFLKRR+GTH RAK KREEL NV+   RK
Sbjct: 67  KDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRK 101



 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 26/63 (41%), Positives = 38/63 (60%)
 Frame = +3

Query: 42  IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 221
           +AVGL KGH  T++           ++ R  R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9   LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 222 AME 230
            +E
Sbjct: 59  VLE 61


>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
            protein.
          Length = 1603

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +3

Query: 12   QSEIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRD 179
            ++E++A R ++   LR+     H+  +++   K  + K   I         T+  KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185

Query: 180  LVREVVGHAQYE 215
            + RE  G  +YE
Sbjct: 1186 IEREYKGIPEYE 1197


>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 5 protein.
          Length = 1603

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +3

Query: 12   QSEIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRD 179
            ++E++A R ++   LR+     H+  +++   K  + K   I         T+  KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185

Query: 180  LVREVVGHAQYE 215
            + RE  G  +YE
Sbjct: 1186 IEREYKGIPEYE 1197


>Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical
           protein F32H2.3 protein.
          Length = 824

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +2

Query: 11  SVRNHGPSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*FS 184
           S RNHG  F N S     P NN N+    G   R S  +  + ++ SS  T+     FS
Sbjct: 413 SSRNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTFS 471


>AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.
          Length = 824

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +2

Query: 11  SVRNHGPSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*FS 184
           S RNHG  F N S     P NN N+    G   R S  +  + ++ SS  T+     FS
Sbjct: 413 SSRNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTFS 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,979,205
Number of Sequences: 27780
Number of extensions: 137632
Number of successful extensions: 312
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)