Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1192
         (425 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ...    48   3e-06
At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ...    48   3e-06
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)            48   3e-06
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ...    46   1e-05
At1g34590.1 68414.m04299 hypothetical protein                          28   2.3  

>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
           ribosomal protein L36, Arabidopsis thaliana,
           EMBL:AC004684
          Length = 108

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 23/34 (67%), Positives = 28/34 (82%)
 Frame = +2

Query: 245 KRQGALKFLKRRLGTHIRAKRKREELSNVLAQMR 346
           K + ALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97



 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 25/61 (40%), Positives = 32/61 (52%)
 Frame = +3

Query: 48  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 227
           VGL KGH  TK          +    RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 8   VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57

Query: 228 E 230
           E
Sbjct: 58  E 58


>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 112

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 23/34 (67%), Positives = 28/34 (82%)
 Frame = +2

Query: 245 KRQGALKFLKRRLGTHIRAKRKREELSNVLAQMR 346
           K + ALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101



 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 24/61 (39%), Positives = 33/61 (54%)
 Frame = +3

Query: 48  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 227
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 228 E 230
           E
Sbjct: 62  E 62


>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
          Length = 113

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 23/34 (67%), Positives = 28/34 (82%)
 Frame = +2

Query: 245 KRQGALKFLKRRLGTHIRAKRKREELSNVLAQMR 346
           K + ALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101



 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 25/61 (40%), Positives = 32/61 (52%)
 Frame = +3

Query: 48  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 227
           VGL KGH  T+          + +  RP   KG  +K + F+R L+REV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61

Query: 228 E 230
           E
Sbjct: 62  E 62


>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 103

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 21/29 (72%), Positives = 25/29 (86%)
 Frame = +2

Query: 260 LKFLKRRLGTHIRAKRKREELSNVLAQMR 346
           LK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 64  LKVAKRKLGTHKRAKRKREEMSSVLRKMR 92



 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 24/61 (39%), Positives = 33/61 (54%)
 Frame = +3

Query: 48  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 227
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 228 E 230
           E
Sbjct: 62  E 62


>At1g34590.1 68414.m04299 hypothetical protein
          Length = 820

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 12  QSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 137
           + ++ AP  E A     GH++ +  A + G+TD+A  + PA+
Sbjct: 770 KDDLKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,651,774
Number of Sequences: 28952
Number of extensions: 131619
Number of successful extensions: 296
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)