Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1191
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    32   0.36 
Z92780-6|CAI46551.1|  691|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81068-14|CAJ30229.1|  691|Caenorhabditis elegans Hypothetical p...    31   1.1  
EF443133-1|ABO31113.1|  656|Caenorhabditis elegans LIM-9 isoform...    31   1.1  

>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 28/74 (37%), Positives = 32/74 (43%)
 Frame = +3

Query: 177 SLTTLVIKYIKFPNSAYFNQLYNCSIIS*YLVPMLAPSWRIIELLFNTESGTLFQTSPM* 356
           S   L I Y      +YFNQ         YL   +  SW  IE   NTE   LFQ SP+ 
Sbjct: 555 SFEQLCINYANEKLQSYFNQHIFQFEQEEYLKEGI--SWTNIEYTDNTECVQLFQVSPI- 611

Query: 357 DGSPYLYPPYFSLR 398
             SP+   PY  LR
Sbjct: 612 --SPFWSKPYGILR 623


>Z92780-6|CAI46551.1|  691|Caenorhabditis elegans Hypothetical
           protein F25H5.1f protein.
          Length = 691

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 489 SCTKYVPRIALDSS*NFIKGHWHTKCHIICDAEKSMEGKG 370
           +CTK +  I      +F   HWH  C I      S+ GKG
Sbjct: 594 ACTKPITGIGGAKFISFEDRHWHNDCFICAQCTTSLVGKG 633


>Z81068-14|CAJ30229.1|  691|Caenorhabditis elegans Hypothetical
           protein F25H5.1f protein.
          Length = 691

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 489 SCTKYVPRIALDSS*NFIKGHWHTKCHIICDAEKSMEGKG 370
           +CTK +  I      +F   HWH  C I      S+ GKG
Sbjct: 594 ACTKPITGIGGAKFISFEDRHWHNDCFICAQCTTSLVGKG 633


>EF443133-1|ABO31113.1|  656|Caenorhabditis elegans LIM-9 isoform
           protein.
          Length = 656

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 489 SCTKYVPRIALDSS*NFIKGHWHTKCHIICDAEKSMEGKG 370
           +CTK +  I      +F   HWH  C I      S+ GKG
Sbjct: 594 ACTKPITGIGGAKFISFEDRHWHNDCFICAQCTTSLVGKG 633


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,415,285
Number of Sequences: 27780
Number of extensions: 271882
Number of successful extensions: 421
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)