Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1190
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0290 + 2246791-2247027,2248089-2248346 107 7e-24
10_08_0310 - 16669565-16669822,16670558-16670794 104 5e-23
06_03_1007 + 26869731-26870429,26871262-26871387 31 0.79
01_06_1794 - 39919363-39920025 29 1.8
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 29 2.4
03_05_0222 + 22082863-22082938,22083261-22083333,22083451-220834... 29 3.2
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 3.2
09_02_0307 + 7131031-7131326,7131414-7131560,7132579-7132711,713... 28 4.2
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 28 4.2
06_03_1219 - 28491185-28494415 28 4.2
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 28 4.2
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 28 5.5
03_06_0467 + 34145126-34145187,34145403-34145759,34146161-341462... 28 5.5
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 28 5.5
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 27 7.3
02_04_0219 + 21007875-21008253,21009774-21009811,21009948-210099... 27 7.3
09_02_0487 + 9828283-9829354,9830436-9830580,9830863-9831153,983... 27 9.7
08_02_0830 - 21617485-21618198 27 9.7
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 27 9.7
05_07_0013 + 27044145-27044339,27044461-27045558 27 9.7
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 107 bits (256), Expect = 7e-24
Identities = 52/111 (46%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Frame = +3
Query: 27 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 206
M G R TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 207 TGRVYNVTAHALGVIVTSVFAEGLYRS-ASISVLSMSSTPSADKTSLRESK 356
TGRV+NVT A+GV + + R + V + + ++ LR+ K
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIK 111
Score = 72.1 bits (169), Expect = 3e-13
Identities = 35/84 (41%), Positives = 54/84 (64%)
Frame = +2
Query: 248 DCHKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 427
+ +K+V RII KRI++RVEHV+ S+C ++ R +N++L +AKA G+ ++ KRQP
Sbjct: 75 EINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAKARGEVISTKRQPEG 134
Query: 428 PKAAHIVSGTEKPVLLAPIPYEFV 499
PK +V G + PIPY+ V
Sbjct: 135 PKPGFMVEGATLET-VTPIPYDVV 157
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 104 bits (249), Expect = 5e-23
Identities = 47/86 (54%), Positives = 59/86 (68%)
Frame = +3
Query: 27 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 206
M G R TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 207 TGRVYNVTAHALGVIVTSVFAEGLYR 284
TGRV+NVT A+GV + + R
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIR 86
Score = 74.5 bits (175), Expect = 5e-14
Identities = 36/84 (42%), Positives = 55/84 (65%)
Frame = +2
Query: 248 DCHKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 427
+ +K+V RII KRI++RVEHV+ S+C ++F R +N++L +AKA G+ ++ KRQP
Sbjct: 75 EINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQPQG 134
Query: 428 PKAAHIVSGTEKPVLLAPIPYEFV 499
PK +V G + PIPY+ V
Sbjct: 135 PKPGFMVEGATLET-VTPIPYDVV 157
>06_03_1007 + 26869731-26870429,26871262-26871387
Length = 274
Score = 30.7 bits (66), Expect = 0.79
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 246 VIVTSVFAEGLYRSASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARP 401
V+V V E Y S + + S S +AD + RG R+PR ARP
Sbjct: 54 VVVVEVEEEEGYESGASAASSTSCVSTADSDVAASAAARRGRRRRPRAAARP 105
>01_06_1794 - 39919363-39920025
Length = 220
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 347 RVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPI 484
R ++ ++ EA AAG + KRQP PP SG A +
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPPSRLKKTSGRNDDAATAAV 72
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 134 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCS 235
W H QW YAT+ I W+ R+ V D S
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568
>03_05_0222 +
22082863-22082938,22083261-22083333,22083451-22083496,
22083639-22083753,22083847-22083926,22084022-22084621,
22084718-22084822,22084916-22085248
Length = 475
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 95 NYSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCH 256
++ LH H QS R W + K Y+ +I KDR ++ D C+ D H
Sbjct: 261 DHEQLHRHPPNQSQRPNVTVSNW-NDKDYSVVTIRCKDRPKLLFDTVCTLTDLH 313
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 126 YKVGDIVDIRGNGAVQKGMPHKVY 197
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>09_02_0307 +
7131031-7131326,7131414-7131560,7132579-7132711,
7133115-7133207,7133421-7133717
Length = 321
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 374 KEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFVA 502
++A AA + L+ + A G E+P L P+PYE+ A
Sbjct: 77 RKAAAAAEADALRSAARQARTASSWYGDERPRWLGPVPYEYPA 119
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 185 TQSIPWKDRSRVQRDCSCSRC-DCHKRVRGRIIPKRINIRVEHVKHSKCRQDF 340
T+S PW+ + ++ S+C D R R + I R ++ +C +DF
Sbjct: 382 TESAPWRQQEKIATSSKASQCRDAEVRPRTASLYAYIERRGGGLEFLECNKDF 434
>06_03_1219 - 28491185-28494415
Length = 1076
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 122 SVQSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCHKRVRGRIIPKRI 292
S++ W H RH + G A Q + W+ R + R S H+R + I+ + I
Sbjct: 869 SLEDWLHERH------AGGGAPQQLDWRARLNIARGASRGVLHIHERCKPHIVHRDI 919
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 134 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRD 229
W H H QW YA++ W+ R V D
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +2
Query: 233 SCSRCDCHKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLK 412
+C R H R+R R P R + E + R+D +R NE +A + + +
Sbjct: 89 NCRRRRHHPRIRLRPPPTRRHCEREREMRGRGRRDGAERAATNEGGETGRRARPQPLVGE 148
Query: 413 RQPAPP 430
R P PP
Sbjct: 149 RTPPPP 154
>03_06_0467 +
34145126-34145187,34145403-34145759,34146161-34146248,
34146361-34146506,34146892-34146936,34147030-34147133,
34147225-34147361,34147651-34147761,34148455-34148664
Length = 419
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 381 PRLPARPST*RDSQLPLKLPTSSVELRNPSYLRLSH 488
P L RP R P+ PT + +++ PS+L L H
Sbjct: 347 PNLQERPMDRRPELGPMPFPTQAWQMQAPSHLPLLH 382
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 311 VKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 418
++ +KCRQD++ VK++ +L+++ A K KRQ
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA--KNEPKKRQ 34
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +3
Query: 276 LYRSASISVLSMSSTPSADKTSLRESKRM 362
+Y+SA++ V + SS P+ADK + + ++M
Sbjct: 410 VYKSANLQVSNSSSIPAADKQTRQTMRQM 438
>02_04_0219 +
21007875-21008253,21009774-21009811,21009948-21009976,
21010398-21010443,21010567-21010681,21010790-21010857,
21011780-21011974,21012180-21012281,21012889-21013119,
21013514-21013684
Length = 457
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 164 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCH 256
C K Y+ ++ +DRS++ D C+ D H
Sbjct: 243 CEEKDYSVVNVKCRDRSKLLFDIVCTLTDMH 273
>09_02_0487 +
9828283-9829354,9830436-9830580,9830863-9831153,
9831984-9832032
Length = 518
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +2
Query: 350 VKENERLLKEAKAA--GKTVNLKRQPAPPKAAH-IVSGTEKPVLLAP 481
V+ +++ LK +A G N R P PP+A++ I G P+LL+P
Sbjct: 93 VQPSKKFLKSLEACIPGNCTN-GRLPTPPQASNDIEEGANMPLLLSP 138
>08_02_0830 - 21617485-21618198
Length = 237
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 320 SKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAA 439
S CR D ++R N+R L A +A + ++ ++P P K A
Sbjct: 149 SPCRADSVERWDSNKRPLSRASSAERW-DINKKPRPKKDA 187
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 81 FRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 245
F T G IP Y+ G + + +G + G PHK+ R+Y++ + ALG
Sbjct: 110 FSTEGEIP-------YREGQSIGVIADGVDKNGKPHKL------RLYSIASSALG 151
>05_07_0013 + 27044145-27044339,27044461-27045558
Length = 430
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +2
Query: 167 SSKGYATQSIPWKDRSRVQRDCSCSRCDCHKRVRGRIIPK 286
++K ++ + +D ++ + C RCD HK ++ I K
Sbjct: 277 AAKHHSLAELTRRDIKTIRGEARCRRCDTHKMIKYDIATK 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,776,304
Number of Sequences: 37544
Number of extensions: 309523
Number of successful extensions: 1153
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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