Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1190
(544 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 111 4e-25
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 33 0.10
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 33 0.10
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 33 0.10
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 29 1.6
AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical ... 29 2.2
Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical pr... 28 3.8
AL034488-2|CAA22448.1| 210|Caenorhabditis elegans Hypothetical ... 28 5.0
Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical pr... 27 6.6
U00065-10|AAA50733.2| 382|Caenorhabditis elegans Hypothetical p... 27 6.6
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 27 6.6
AC006769-14|AAF60579.1| 378|Caenorhabditis elegans Hypothetical... 27 6.6
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 27 8.7
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 27 8.7
AC017117-2|AAF16617.1| 295|Caenorhabditis elegans Hypothetical ... 27 8.7
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 111 bits (266), Expect = 4e-25
Identities = 51/76 (67%), Positives = 59/76 (77%)
Frame = +3
Query: 27 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 206
MTNSKG RRGTR +FAR FR HG LSTY YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1 MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60
Query: 207 TGRVYNVTAHALGVIV 254
TGR++NVT A+G+IV
Sbjct: 61 TGRIFNVTRGAVGIIV 76
Score = 97.5 bits (232), Expect = 5e-21
Identities = 48/85 (56%), Positives = 61/85 (71%), Gaps = 2/85 (2%)
Frame = +2
Query: 254 HKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV-NLKRQPAPP 430
+KRVRG I+PKRINIR+EH+K SKCR DFL RVK N+ K AK+AG+ V LKR P P
Sbjct: 77 NKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAP 136
Query: 431 KAAH-IVSGTEKPVLLAPIPYEFVA 502
+ AH + + +P LLAP+ +E VA
Sbjct: 137 RGAHTVTTQNNEPELLAPLRFEIVA 161
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 211 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 74
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 211 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 74
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 211 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 74
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 404 NLKRQPAPPKAAHIVSGTE 460
NL+R+PAPPK H+ S E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480
>AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical
protein Y80D3A.9 protein.
Length = 279
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 469 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 383
DG LS D+ RG+WL + G G L
Sbjct: 39 DGMLSGVDEKDVARGTWLGMDAHGKVGML 67
>Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical
protein F49E2.5d protein.
Length = 889
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 302 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLA 478
VE+V + K+N++ K++++ T ++ PAPP+ +V EKPV A
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--A 418
Query: 479 PI 484
P+
Sbjct: 419 PV 420
>Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical
protein R186.1 protein.
Length = 276
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 469 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 383
DG LS D + RG+WL L +G G +
Sbjct: 39 DGILSGVDKQENARGTWLGLNENGRIGMM 67
>AL034488-2|CAA22448.1| 210|Caenorhabditis elegans Hypothetical
protein Y54G11A.2 protein.
Length = 210
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/70 (25%), Positives = 37/70 (52%)
Frame = +2
Query: 254 HKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPK 433
HK+V+ ++P +IN V ++ ++ + D KE ER ++AK K L+++ +
Sbjct: 113 HKQVKHTVVPTKINEIVNRLEKTRRKDDI--DYKE-ERDARDAKERQKLKKLEQERKDRE 169
Query: 434 AAHIVSGTEK 463
+++ EK
Sbjct: 170 KKEMLAQNEK 179
>Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical
protein C06H5.2 protein.
Length = 382
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 364 LILFDSLKEVLSALGVL 314
LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216
>Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical
protein C06H5.1 protein.
Length = 379
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 364 LILFDSLKEVLSALGVL 314
LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216
>Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical
protein F32B4.4b protein.
Length = 663
Score = 27.5 bits (58), Expect = 6.6
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Frame = +2
Query: 227 DCSCSRCDCHKRVRGRIIPKRINI----RVEHVKHSKCRQDFLKRVKENERLLKEAKAAG 394
D S R KR R +P I+ R H H +QD + + E+ +E ++
Sbjct: 229 DTSGCRGGAIKRSVERSVPNNISTSELRRKHHQIHVTVQQDAPRASYQTEQYARERSSST 288
Query: 395 KTVNLKRQPAPPKAAHIVSGTEKPVLLAP 481
T + +RQ +P ++ E P AP
Sbjct: 289 TTSSRRRQVSPDRSEQRRHRDEPPPRRAP 317
>Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical
protein F32B4.4a protein.
Length = 771
Score = 27.5 bits (58), Expect = 6.6
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Frame = +2
Query: 227 DCSCSRCDCHKRVRGRIIPKRINI----RVEHVKHSKCRQDFLKRVKENERLLKEAKAAG 394
D S R KR R +P I+ R H H +QD + + E+ +E ++
Sbjct: 337 DTSGCRGGAIKRSVERSVPNNISTSELRRKHHQIHVTVQQDAPRASYQTEQYARERSSST 396
Query: 395 KTVNLKRQPAPPKAAHIVSGTEKPVLLAP 481
T + +RQ +P ++ E P AP
Sbjct: 397 TTSSRRRQVSPDRSEQRRHRDEPPPRRAP 425
>U00065-10|AAA50733.2| 382|Caenorhabditis elegans Hypothetical
protein D1044.1 protein.
Length = 382
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 185 TQSIPWKDRSRVQRDCSCSRCDCHKRVR-GRIIPKRINIRVEHVKHSKCRQDFLKRVKEN 361
+ IPWK+ V D + R + + ++ P ++ R++ VKH+ K+N
Sbjct: 177 SDEIPWKNYENVLYDAAYIRMLHNDTLDFEKLCPAELSGRIQEVKHAFDEDGVRNSEKKN 236
Query: 362 ERL 370
E+L
Sbjct: 237 EKL 239
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 128 QSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCS 241
Q RHC Q C S Y W+ RSRV +C+
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCT 403
>AC006769-14|AAF60579.1| 378|Caenorhabditis elegans Hypothetical
protein Y45G12C.1 protein.
Length = 378
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 322 GVLDMLNT-DIDALRYNPSANTLVTITPRA*AVTLYTRPVFPWYTLCGI 179
G+LD T DID L+ N + L + A T +T + W+TLC +
Sbjct: 272 GLLDYFPTFDIDDLKSNEKSLQLSAMLVYL-ARTQFTLDILKWHTLCAL 319
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +2
Query: 278 IPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 457
+P R+ V+ + ++ +R KE+E + + + + R P PP I
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266
Query: 458 EKPVLLAPIPYE 493
+ L IP E
Sbjct: 267 PPNIPLPTIPQE 278
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +2
Query: 278 IPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 457
+P R+ V+ + ++ +R KE+E + + + + R P PP I
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266
Query: 458 EKPVLLAPIPYE 493
+ L IP E
Sbjct: 267 PPNIPLPTIPQE 278
>AC017117-2|AAF16617.1| 295|Caenorhabditis elegans Hypothetical
protein F43C11.7 protein.
Length = 295
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 336 SCLHLECLTCSTRILMRFGIILPRTRL*QSHREHE 232
+C H C CS++++ F I+ P R RE+E
Sbjct: 26 TCGHSICKACSSKLVSNFKILCPFCRKTTELRENE 60
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,072,642
Number of Sequences: 27780
Number of extensions: 252757
Number of successful extensions: 974
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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