Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1188
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1252 - 35748000-35748173,35748243-35748375,35749771-357498...    29   2.8  
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611...    29   4.9  
12_02_0319 + 17482431-17482538,17482808-17482861,17482958-174831...    28   8.6  
04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086...    28   8.6  
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432...    28   8.6  

>01_06_1252 -
           35748000-35748173,35748243-35748375,35749771-35749847,
           35750465-35750509,35750584-35750679,35751125-35751130,
           35751259-35751388,35751510-35751706
          Length = 285

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -3

Query: 266 DPARSPLTRWLPTTAGTK-SSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLT 90
           DP +  L ++      +K SS  G+ +  +D  I   SG       G   A   G GY+ 
Sbjct: 98  DPLKIYLHKYREMEGDSKLSSKAGDGSVKKDT-IGPHSGASSSSAQGMVGAYTQGMGYMQ 156

Query: 89  PQSN-QVLLFFRTYA 48
           PQSN  +L+  +++A
Sbjct: 157 PQSNFHILVVLQSFA 171


>05_05_0036 -
           21758409-21758531,21758891-21759206,21759964-21761121,
           21761236-21761333
          Length = 564

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 138 VRWPWICHDGWPRLFDASI*SSASLLPHVRSE 43
           VR+ W+C+D   RL D S+ S  S    ++ E
Sbjct: 416 VRFEWVCYDSAKRLLDKSLYSVLSDFAQIQDE 447


>12_02_0319 +
           17482431-17482538,17482808-17482861,17482958-17483125,
           17483211-17483264,17483354-17483503,17484149-17484523
          Length = 302

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 425 YDVRVLRSECEFVCYIVPVIFSACTHECL 511
           +DV+ ++ E   +CY +  IF   T  CL
Sbjct: 264 FDVKTIKDETSDLCYAMTPIFGESTSRCL 292


>04_04_0326 -
           24407201-24407374,24407397-24407460,24408266-24408689,
           24408885-24409057,24409178-24409275,24409723-24409853,
           24410053-24410174,24411091-24411245,24411976-24412081,
           24412328-24412419,24412499-24412620,24413444-24413544,
           24413636-24413849,24414173-24414311,24415228-24415584
          Length = 823

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -2

Query: 165 LAVWPSRVQVRWPWICHDGWPRLFDASI*SSASLLPHVRSERLDI 31
           LAV PS      PW CH    R+ +A   +S    P  R E   +
Sbjct: 731 LAVTPSMFTDHLPWRCHYAMQRVLEAQTAASCPDSPESRIELFSV 775


>02_05_0232 +
           27041793-27042087,27042822-27042943,27043098-27043219,
           27043601-27043705,27043828-27044257,27044356-27044517,
           27044565-27045260,27045349-27046128,27046441-27046654,
           27047621-27047981,27047993-27048140,27048276-27048419,
           27048784-27048888,27049749-27049794,27050089-27050255,
           27050338-27050490,27050654-27050950,27051053-27051220,
           27051298-27051363,27051451-27051927,27052031-27052768,
           27052935-27053120
          Length = 1993

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 23/87 (26%), Positives = 37/87 (42%)
 Frame = +2

Query: 38  SRSERTCGRREALD*IEASNNLGQPSWHIHGHRTCTLEGQTARRSIYPWVLWSYLSTMTW 217
           SR   T   + AL  +EA++   +  +   GH  CT E  T   +I P    +  ST++ 
Sbjct: 179 SRKMNTPKSKTALKILEAADPSCKIWFTCKGHLICTREANTTVPAIPPSPAHTVASTLS- 237

Query: 218 YQRLSATILSMETSPDPGQVRSCPRCP 298
              +S+ + SM   P   +  S    P
Sbjct: 238 SSSISSRMRSMSLHPSESEASSSSGSP 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,537,469
Number of Sequences: 37544
Number of extensions: 498076
Number of successful extensions: 1388
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)