Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1188
(721 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 36 0.033
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 33 0.31
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011) 32 0.41
SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2) 32 0.54
SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064) 31 1.2
SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13) 30 1.6
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 30 2.2
SB_31271| Best HMM Match : Extensin_2 (HMM E-Value=5.7) 30 2.2
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1) 30 2.2
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11) 29 2.9
SB_14604| Best HMM Match : PT (HMM E-Value=5.1) 29 2.9
SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10) 29 3.8
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7) 29 3.8
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 29 5.0
SB_9202| Best HMM Match : ig (HMM E-Value=5e-40) 28 6.6
SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8) 28 6.6
SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69) 28 6.6
SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 35.9 bits (79), Expect = 0.033
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +2
Query: 389 CCEC-VTCVS--VCFYDVRVLRSECEFVCYIVPVIFSACTHEC 508
CC C V C S V Y RV C VCY V+F +C C
Sbjct: 171 CCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCRVVFCSCRVAC 213
>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1841
Score = 32.7 bits (71), Expect = 0.31
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 176 KLISSQSGPQEYRFDGRGYAT-MAGRGYLTPQSNQVLLFFRTYAPNGLI 33
+++ ++ P+ Y FDG YA + + N V+L FRT PNGL+
Sbjct: 749 RILKRETDPEGY-FDGSAYAEYLLNDEKVDSNKNTVMLEFRTIQPNGLL 796
>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
Length = 734
Score = 32.3 bits (70), Expect = 0.41
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -2
Query: 513 YKHS*VHALNITGTI*HTNSH--SLRNTRTS*KHTLTHVTHS 394
+ HS HAL T T+ HT+SH SL TRT TL H THS
Sbjct: 262 HTHSHSHALLFTRTLIHTHSHPHSLLFTRTIIHTTLIH-THS 302
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 513 YKHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHV-THSQHFNTISNISH 361
+ HS HAL+ T TI HT+SHS + S TL H +HS + S + H
Sbjct: 364 HTHSHPHALSFTRTIIHTHSHS--HHALSFTCTLIHTHSHSLALSFTSTLIH 413
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -2
Query: 531 YSIQ*TYKHS*VHALNITGTI*HTNSHS--LRNTRTS*KHTLTH 406
++I T+ HS HAL+ T T+ HT+SHS L T + HT +H
Sbjct: 327 FTIIRTHSHS--HALSFTHTLIHTHSHSHALSFTPRTVIHTHSH 368
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -2
Query: 513 YKHS*VHALNITGTI*HTNSHS--LRNTRTS*KHTLTHVTHSQHF 385
+ HS H L+ T T+ HT+SHS L TRT HT +H HS F
Sbjct: 246 HTHSPSHTLSFTRTLIHTHSHSHALLFTRTL-IHTHSH-PHSLLF 288
Score = 27.9 bits (59), Expect = 8.8
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = -2
Query: 513 YKHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQHFNTIS 373
+ HS H+L T TI T+SHS + T HTL H THS H + +S
Sbjct: 315 HTHSHPHSLLFTFTIIRTHSHSHALSFT---HTLIH-THS-HSHALS 356
>SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 31.9 bits (69), Expect = 0.54
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Frame = -2
Query: 465 HTN----SHSLRNTRTS*KH----TLTHVTHSQHFNTISNISHYRFLGRLHGDRHSERIP 310
HTN +H T TS +H T T TH +H TIS HY +H E I
Sbjct: 142 HTNIVSRTHHYNITNTSLQHHEHITTTSRTHHEHITTISRTHHYNITNT--SLQHHEHIT 199
Query: 309 VCSDGHRGQLRT 274
S H + T
Sbjct: 200 TISRTHHEHITT 211
Score = 31.9 bits (69), Expect = 0.54
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = -2
Query: 495 HALNITGTI*HTNSHSLRNTRTS*KHTLTHV--THSQHFNTISNISHYRFLGRLHGDRHS 322
H +IT TI T+ +++ NT +T + TH +H TIS HY +H
Sbjct: 172 HHEHIT-TISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRTHHYNITNT--SLQHH 228
Query: 321 ERIPVCSDGHRGQLRT 274
E I S H + T
Sbjct: 229 EHITTISRTHHEHITT 244
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 495 HALNITGTI*HTNSHSLRNTRTS*KHTLTHV--THSQHFNTISNISHY 358
H +IT TI T+ +++ NT +T + TH +H TIS HY
Sbjct: 205 HHEHIT-TISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRTHHY 251
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 31.9 bits (69), Expect = 0.54
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 137 FDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYLLKAS 15
F G GY G +N++ L+FRT P+GLI L S
Sbjct: 1339 FPGNGYYKFPGSYVREGTTNEIELWFRTQYPDGLILFLSDS 1379
>SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)
Length = 225
Score = 31.9 bits (69), Expect = 0.54
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Frame = -2
Query: 465 HTN----SHSLRNTRTS*KH----TLTHVTHSQHFNTISNISHYRFLGRLHGDRHSERIP 310
HTN +H T TS +H T T TH +H TIS HY +H E I
Sbjct: 75 HTNIVSRTHHYNITNTSLQHHEHITTTSRTHHEHITTISRTHHYNITNT--SLQHHEHIT 132
Query: 309 VCSDGHRGQLRT 274
S H + T
Sbjct: 133 TISRTHHEHITT 144
Score = 31.9 bits (69), Expect = 0.54
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = -2
Query: 495 HALNITGTI*HTNSHSLRNTRTS*KHTLTHV--THSQHFNTISNISHYRFLGRLHGDRHS 322
H +IT TI T+ +++ NT +T + TH +H TIS HY +H
Sbjct: 105 HHEHIT-TISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRTHHYNITNT--SLQHH 161
Query: 321 ERIPVCSDGHRGQLRT 274
E I S H + T
Sbjct: 162 EHITTISRTHHEHITT 177
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 495 HALNITGTI*HTNSHSLRNTRTS*KHTLTHV--THSQHFNTISNISHY 358
H +IT TI T+ +++ NT +T + TH +H TIS HY
Sbjct: 138 HHEHIT-TISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRTHHY 184
>SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)
Length = 422
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 269 GQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCEC 400
GQ +SC RC + G++ EC P RP +R E L + +C
Sbjct: 198 GQPQSCLRCSEIGHGVK-ECTKPRRRPHRRRREELTTEQERMQC 240
>SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)
Length = 470
Score = 30.3 bits (65), Expect = 1.6
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Frame = -3
Query: 398 THNTSTQFLIFHTTVF*DDYMVIGIQNGYPYVVMDIGDSSEPGQDPARSPLTRWLPTTAG 219
TH TST+ F + D Y + P + + D PA SP+ T A
Sbjct: 333 THETSTKKSGFGASFSGDRYQPTISPDAPPKITLPAEDMLSSISGPAISPIQSKYSTPAQ 392
Query: 218 TKSSLTGNSTEPR-----DKLISSQSGPQEYR 138
+L+ +EPR + S SGP Y+
Sbjct: 393 ADEALSTMPSEPRASPRMQRKYSPTSGPSSYK 424
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 29 GISSRSERTCGRREALD*IEASNNLGQPSWHIHGHRTCTLEGQTARR 169
G + E CG+R D +NN+ Q S IHG+ TL+G R
Sbjct: 684 GTNKLYECKCGQRHCGDKSNLTNNVCQFSHCIHGNCMVTLDGHRCAR 730
>SB_31271| Best HMM Match : Extensin_2 (HMM E-Value=5.7)
Length = 323
Score = 29.9 bits (64), Expect = 2.2
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Frame = -3
Query: 713 TVDEMSTST-HVSAYFRTKEKDGFI-LYLGNPKGTMLRRTKSVCLKIIIFLH-Y*QHNND 543
T + S +T HV Y T + + Y + T T + + +++H Y +
Sbjct: 7 TYNTTSQATRHVHTYNTTSKATRHVHTYNITSQATRFVHTYNTTSQASLYVHTYNTTSQA 66
Query: 542 LYHITAYNKLISTHEYTH*I*PALYNTQTH-THFVTRAHHKNTHSHM*RTHNTSTQ 378
H+ YN Y H YNT + TH+V + + +H T+NT++Q
Sbjct: 67 TRHVHTYNTTSQATHYVH-----TYNTTSQATHYVHTYNTTSQATHYVHTYNTTSQ 117
>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
Length = 236
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -2
Query: 507 HS*VHALNITGTI*HTNSHSLRNTR---TS*KHTLTHVTHSQHFNTISNISHYRFLGRLH 337
H+ H L++TG H H+L TR + HTL HVT + T + R++ H
Sbjct: 97 HATCHTLHVTGNTSHATCHTLHVTRYMSHATCHTL-HVTGNTSHATCHTLHVTRYMS--H 153
Query: 336 GDRHS 322
RH+
Sbjct: 154 ATRHT 158
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = -2
Query: 507 HS*VHALNITGTI*HTNSHSLRNTR-TS*K--HTLTHVTHSQHFNTISNISHYRFLGRL- 340
H+ H L++T + H H+L TR TS HTL H H + T + H + R
Sbjct: 139 HATCHTLHVTRYMSHATRHTLHVTRYTSHATCHTLRHTLHVTRY-TSHSTRHTLHVTRYM 197
Query: 339 -HGDRH 325
H RH
Sbjct: 198 SHASRH 203
>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
Length = 1214
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 417 CVFMMCACYEVSVSLCVI*CRLY---LVRVLMSAYKFIVCCNMVQIIVMLLIV 566
C F CA VS CV+ CR+ +V + + + + CC + ++V+ +V
Sbjct: 250 CAFFSCAVLYRVVSCCVVSCRVLSCCIVSCRVVSCRVLSCCIVSCLVVLYRVV 302
>SB_14604| Best HMM Match : PT (HMM E-Value=5.1)
Length = 344
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -3
Query: 287 DSSEPGQDPARSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQ 147
D +P P+++P R+ TT GTK +G S PRD+ + + PQ
Sbjct: 213 DQQKPS-GPSQNP--RYQATTLGTKPQPSGPSHNPRDQATTLGTKPQ 256
>SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)
Length = 293
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 465 HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISHYR 355
HT ++S +TR + H TH TH +T +N SH R
Sbjct: 170 HTRNNS-SHTRNNSSHGTTHRTHGTTHHTQNNSSHTR 205
>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
Length = 540
Score = 29.1 bits (62), Expect = 3.8
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +2
Query: 281 SCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCECV---TCVSVCFYDVRVLRSE 451
SC RC LH G+ S C P + ++ I C CV +S+CF RVL
Sbjct: 337 SC-RCV-LHRGLMSMCF-----PSRANVDVFHIACSCL-CVLHRVLMSMCFD--RVLMPM 386
Query: 452 CEFVCYIVPVIFSACTHECL 511
C +C V V AC+ C+
Sbjct: 387 CSPLCVHVDVFPIACSCRCV 406
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -2
Query: 363 HYRFLGRLHGDRHSERIPVCSDGHRGQLRTWPGSGEVSIDKMVADNRWYQVIVDR 199
H + LH H+E DG+ QLR W + +D A + Y++++ +
Sbjct: 383 HNEDIQALH-KMHAEERKTLIDGYENQLREWKSKHDHLMDTYTASVKDYEIMITK 436
>SB_9202| Best HMM Match : ig (HMM E-Value=5e-40)
Length = 1604
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -3
Query: 698 STSTHVSAYFRTKEKDGFILYLGNPKGTMLRRTKSVCLKIIIFLHY 561
+TS V A +T E+D +L+ G ++R+T+ C+ I + + +
Sbjct: 1531 TTSDSVRASHKTSEEDTALLFYGFRHSVVVRKTRVGCVVIEVIVMF 1576
>SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)
Length = 604
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -2
Query: 498 VHALNI-TGTI*HTNSHSLRNTRTS*K-HTLTHVTHSQHFNTISNISH 361
VH+ NI +GT N ++L + S +TL+ + HS + NT+S I H
Sbjct: 308 VHSSNILSGTDHSDNGNNLSSMDHSDNDYTLSGIDHSDNGNTLSGIDH 355
>SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69)
Length = 250
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 473 LYNTQTHTHFVTRAHHKNTH 414
+YN + HT + AHH NTH
Sbjct: 19 IYNNKCHTEKASIAHHLNTH 38
>SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 441 NTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDR 328
+T S TL VTHS ++++ ++SH RF G H R
Sbjct: 240 HTLVSVSLTLLGVTHSIRYHSLFSVSHTRF-GVTHSSR 276
>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 27.9 bits (59), Expect = 8.8
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Frame = +3
Query: 414 VCVFMMCAC-----YEVSVSLCVI*CRLYLVRVLMSAYKFIVC---CNMVQIIVMLLIV* 569
VCV + C Y V VSLC R+ + V S Y VC C +VM +
Sbjct: 260 VCVSLRSQCVRVIMYTVCVSLCAQCMRVVMCTVCASRYVHSVCVSLCTQCMRVVMCTVCA 319
Query: 570 EYYDFKTYRFGSPQHGSLRVAEVQNEAILFLCSEVCRHV 686
Y Q S+RV ++ A++ CR+V
Sbjct: 320 CRYIHSVCVSLCAQ--SVRVVKITVYAVVMYTVYACRYV 356
>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +2
Query: 389 CCECVTCVSVCFYDVRVLRSECEFVCYIVPVIFSACTHECL*VYCML*YGTNHCYVVNS 565
C +C TC+ C Y V V V +F + H+C+ C +H YVV S
Sbjct: 549 CRQCATCL--CRYVASV--QHVYVVMSPVCTMFMSLCHQCVPCLCRYVASVHHVYVVMS 603
>SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1227
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -2
Query: 444 RNTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDRHSE 319
R T ++T+ TH +H NTI +H+ + H E
Sbjct: 413 RTTHLEHENTIPRTTHHEHENTIPRTTHHEHENTIPRTTHHE 454
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,449,905
Number of Sequences: 59808
Number of extensions: 600147
Number of successful extensions: 1844
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1816
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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