Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1188
(721 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X58531-1|CAA41418.1| 2628|Homo sapiens laminin A chain protein. 37 0.084
BC062318-1|AAH62318.1| 559|Homo sapiens LAMA1 protein protein. 34 0.59
BC039051-1|AAH39051.1| 747|Homo sapiens LAMA1 protein protein. 34 0.59
Z99289-2|CAI42325.1| 1823|Homo sapiens laminin, alpha 4 protein. 33 0.78
X91171-1|CAA62596.1| 1816|Homo sapiens laminin alpha 4 protein. 33 0.78
X76939-1|CAA54258.1| 1581|Homo sapiens laminin A3 protein. 33 0.78
S78569-1|AAB34635.1| 1816|Homo sapiens laminin alpha 4 chain pro... 33 0.78
BC066552-1|AAH66552.1| 1816|Homo sapiens LAMA4 protein protein. 33 0.78
AL590106-3|CAI12950.1| 1823|Homo sapiens laminin, alpha 4 protein. 33 0.78
AB210027-1|BAE06109.1| 1852|Homo sapiens LAMA4 variant protein p... 33 0.78
AK094875-1|BAC04446.1| 149|Homo sapiens protein ( Homo sapiens ... 33 1.0
BC146674-1|AAI46675.1| 788|Homo sapiens Unknown (protein for MG... 33 1.4
Y13667-1|CAA74018.1| 667|Homo sapiens putative transcription fa... 32 1.8
BC053626-1|AAH53626.1| 667|Homo sapiens midline 1 (Opitz/BBB sy... 32 1.8
AK128083-1|BAC87264.1| 225|Homo sapiens protein ( Homo sapiens ... 32 1.8
AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens ... 32 1.8
AF269101-1|AAG33130.1| 667|Homo sapiens midline 1 protein. 32 1.8
AF230976-1|AAG50191.1| 667|Homo sapiens tripartite motif protei... 32 1.8
AF041210-1|AAC33002.1| 630|Homo sapiens midline 1 fetal kidney ... 32 1.8
AF041209-1|AAC33001.1| 667|Homo sapiens midline 1 fetal kidney ... 32 1.8
AF041208-1|AAC33000.1| 667|Homo sapiens midline 1 fetal kidney ... 32 1.8
AF035360-1|AAB99951.1| 667|Homo sapiens ring finger protein pro... 32 1.8
AK123603-1|BAC85658.1| 143|Homo sapiens protein ( Homo sapiens ... 32 2.4
AK126537-1|BAC86582.1| 467|Homo sapiens protein ( Homo sapiens ... 31 3.1
AK124073-1|BAC85767.1| 536|Homo sapiens protein ( Homo sapiens ... 31 3.1
AK096940-1|BAC04906.1| 226|Homo sapiens protein ( Homo sapiens ... 31 3.1
AB076353-1|BAD01540.1| 365|Homo sapiens keratin associated prot... 31 3.1
AK128797-1|BAC87611.1| 201|Homo sapiens protein ( Homo sapiens ... 31 4.1
AF230977-1|AAG50192.1| 552|Homo sapiens tripartite motif protei... 31 4.1
AB065580-1|BAC05810.1| 346|Homo sapiens seven transmembrane hel... 31 5.5
AY210418-1|AAO34701.1| 3487|Homo sapiens CUB and sushi multiple ... 30 7.3
AB212622-1|BAD97692.1| 3631|Homo sapiens CSMD2 protein protein. 30 7.3
AY024361-1|AAK00583.1| 4911|Homo sapiens MLL3 protein. 30 9.6
AL833924-1|CAD38780.1| 1033|Homo sapiens hypothetical protein pr... 30 9.6
AF264750-1|AAF74766.2| 4025|Homo sapiens ALR-like protein protein. 30 9.6
AC006017-3|AAD45822.1| 1813|Homo sapiens WUGSC:H_DJ0981O07.3 pro... 30 9.6
>X58531-1|CAA41418.1| 2628|Homo sapiens laminin A chain protein.
Length = 2628
Score = 36.7 bits (81), Expect = 0.084
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -3
Query: 167 SSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYLL 24
SSQ+ + FDG GY+ + L Q+++ F T++PNGL+ L
Sbjct: 2300 SSQNEDPSFHFDGSGYSVVEKS--LPATVTQIIMLFNTFSPNGLLLYL 2345
>BC062318-1|AAH62318.1| 559|Homo sapiens LAMA1 protein protein.
Length = 559
Score = 33.9 bits (74), Expect = 0.59
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 137 FDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYLLKASVFEA 3
FDG GYA + GY + L FRT + NG++ + + +A
Sbjct: 379 FDGSGYAALVKEGYKVQSDVNITLEFRTSSQNGVLLGISTAKVDA 423
>BC039051-1|AAH39051.1| 747|Homo sapiens LAMA1 protein protein.
Length = 747
Score = 33.9 bits (74), Expect = 0.59
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 137 FDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYLLKASVFEA 3
FDG GYA + GY + L FRT + NG++ + + +A
Sbjct: 567 FDGSGYAALVKEGYKVQSDVNITLEFRTSSQNGVLLGISTAKVDA 611
>Z99289-2|CAI42325.1| 1823|Homo sapiens laminin, alpha 4 protein.
Length = 1823
Score = 33.5 bits (73), Expect = 0.78
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 182 RDKLISSQSGPQEYRFDGRGYATMAG--RGYLTPQSNQVLLFFRTYAPNGLIYLL 24
RDKL +QS Y FDG GYA + R Q + + RT A NGLI L+
Sbjct: 1037 RDKLAFTQSRAASYFFDGSGYAVVRDITRRGKFGQVTRFDIEVRTPADNGLILLM 1091
>X91171-1|CAA62596.1| 1816|Homo sapiens laminin alpha 4 protein.
Length = 1816
Score = 33.5 bits (73), Expect = 0.78
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 182 RDKLISSQSGPQEYRFDGRGYATMAG--RGYLTPQSNQVLLFFRTYAPNGLIYLL 24
RDKL +QS Y FDG GYA + R Q + + RT A NGLI L+
Sbjct: 1030 RDKLAFTQSRAASYFFDGSGYAVVRDITRRGKFGQVTRFDIEVRTPADNGLILLM 1084
>X76939-1|CAA54258.1| 1581|Homo sapiens laminin A3 protein.
Length = 1581
Score = 33.5 bits (73), Expect = 0.78
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 182 RDKLISSQSGPQEYRFDGRGYATMAG--RGYLTPQSNQVLLFFRTYAPNGLIYLL 24
RDKL +QS Y FDG GYA + R Q + + RT A NGLI L+
Sbjct: 795 RDKLAFTQSRAASYFFDGSGYAVVRDITRRGKFGQVTRFDIEVRTPADNGLILLM 849
>S78569-1|AAB34635.1| 1816|Homo sapiens laminin alpha 4 chain protein.
Length = 1816
Score = 33.5 bits (73), Expect = 0.78
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 182 RDKLISSQSGPQEYRFDGRGYATMAG--RGYLTPQSNQVLLFFRTYAPNGLIYLL 24
RDKL +QS Y FDG GYA + R Q + + RT A NGLI L+
Sbjct: 1030 RDKLAFTQSRAASYFFDGSGYAVVRDIPRRGKFGQVTRFDIEVRTPADNGLILLM 1084
>BC066552-1|AAH66552.1| 1816|Homo sapiens LAMA4 protein protein.
Length = 1816
Score = 33.5 bits (73), Expect = 0.78
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 182 RDKLISSQSGPQEYRFDGRGYATMAG--RGYLTPQSNQVLLFFRTYAPNGLIYLL 24
RDKL +QS Y FDG GYA + R Q + + RT A NGLI L+
Sbjct: 1030 RDKLAFTQSRAASYFFDGSGYAVVRDITRRGKFGQVTRFDIEVRTPADNGLILLM 1084
>AL590106-3|CAI12950.1| 1823|Homo sapiens laminin, alpha 4 protein.
Length = 1823
Score = 33.5 bits (73), Expect = 0.78
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 182 RDKLISSQSGPQEYRFDGRGYATMAG--RGYLTPQSNQVLLFFRTYAPNGLIYLL 24
RDKL +QS Y FDG GYA + R Q + + RT A NGLI L+
Sbjct: 1037 RDKLAFTQSRAASYFFDGSGYAVVRDITRRGKFGQVTRFDIEVRTPADNGLILLM 1091
>AB210027-1|BAE06109.1| 1852|Homo sapiens LAMA4 variant protein
protein.
Length = 1852
Score = 33.5 bits (73), Expect = 0.78
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 182 RDKLISSQSGPQEYRFDGRGYATMAG--RGYLTPQSNQVLLFFRTYAPNGLIYLL 24
RDKL +QS Y FDG GYA + R Q + + RT A NGLI L+
Sbjct: 1066 RDKLAFTQSRAASYFFDGSGYAVVRDITRRGKFGQVTRFDIEVRTPADNGLILLM 1120
>AK094875-1|BAC04446.1| 149|Homo sapiens protein ( Homo sapiens
cDNA FLJ37556 fis, clone BRCAN2028545. ).
Length = 149
Score = 33.1 bits (72), Expect = 1.0
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = +2
Query: 362 CEILEIVLKCCECVTCVSVCFYDVRVLRSECEFVCYIVPVIFSACTHECL*VYCML*YGT 541
C + I + CEC C C Y VR+ EC+ C V C C+ V +
Sbjct: 74 CMTVHICARVCECA-CA--CVY-VRMSVHECKCACVYVCKRVCTCACVCMCVQVCMCASV 129
Query: 542 NHCYVVNSVRIL 577
+ C V SVR++
Sbjct: 130 HMCIVCVSVRVV 141
>BC146674-1|AAI46675.1| 788|Homo sapiens Unknown (protein for
MGC:164982) protein.
Length = 788
Score = 32.7 bits (71), Expect = 1.4
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -3
Query: 269 QDPARSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYL 93
Q P++ L + GT+ S+ G P+ ++ + S FDGR + GR YL
Sbjct: 719 QAPSKPAQALLLNSIQGTEGSIEGFLEAPKMEMSQAPSSVMSLHFDGRAQDSRTGRDYL 777
>Y13667-1|CAA74018.1| 667|Homo sapiens putative transcription
factor XPRF protein.
Length = 667
Score = 32.3 bits (70), Expect = 1.8
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Frame = -3
Query: 341 YMVIGIQNGYPYVVM-----DIGD-SSEPGQDPARSPLTRWLPTTAGTKSSLT-GNSTEP 183
Y V G+Q+G Y+ M G SSEPG+ S + P +A K ++ N T
Sbjct: 448 YTVHGLQSGTKYIFMVKAINQAGSRSSEPGKLKTNSQPFKLDPKSAHRKLKVSHDNLTVE 507
Query: 182 RDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN--QVLLFFRTYAPNGLIY 30
RD+ S +S E RF +G +AG ++ + +V++ T+ GL Y
Sbjct: 508 RDESSSKKSHTPE-RFTSQGSYGVAGNVFIDSGRHYWEVVISGSTWYAIGLAY 559
>BC053626-1|AAH53626.1| 667|Homo sapiens midline 1 (Opitz/BBB
syndrome) protein.
Length = 667
Score = 32.3 bits (70), Expect = 1.8
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Frame = -3
Query: 341 YMVIGIQNGYPYVVM-----DIGD-SSEPGQDPARSPLTRWLPTTAGTKSSLT-GNSTEP 183
Y V G+Q+G Y+ M G SSEPG+ S + P +A K ++ N T
Sbjct: 448 YTVHGLQSGTKYIFMVKAINQAGSRSSEPGKLKTNSQPFKLDPKSAHRKLKVSHDNLTVE 507
Query: 182 RDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN--QVLLFFRTYAPNGLIY 30
RD+ S +S E RF +G +AG ++ + +V++ T+ GL Y
Sbjct: 508 RDESSSKKSHTPE-RFTSQGSYGVAGNVFIDSGRHYWEVVISGSTWYAIGLAY 559
>AK128083-1|BAC87264.1| 225|Homo sapiens protein ( Homo sapiens
cDNA FLJ46204 fis, clone TESTI4009501. ).
Length = 225
Score = 32.3 bits (70), Expect = 1.8
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -2
Query: 534 YYSIQ*TYKHS*VHALNITGTI*H--TNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISH 361
Y++ T HS H+ +T TI H T++H+ +T TS +TH+ +S +SH
Sbjct: 146 YHTRTLTLTHSHAHSCTLTSTITHMHTHTHTHMHTHTSTLTRTLTLTHTHMHTFLSLVSH 205
Score = 29.9 bits (64), Expect = 9.6
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 536 HITAYNKLIS-THEYTH*I*PALYNTQTHTHFVTRAHHKNTHSHM*RTHNTST 381
H + ++++ +H +TH A + TH H TRAH + H+H ++T T
Sbjct: 102 HTQMHTRILTLSHMHTH----AHTHAHTHGHTHTRAHSTHAHTHAHSHYHTRT 150
>AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens
cDNA FLJ41637 fis, clone FEBRA1000030, weakly similar
to T-CELL RECEPTOR BETA CHAIN ANA 11. ).
Length = 207
Score = 32.3 bits (70), Expect = 1.8
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = -3
Query: 569 LHY*QHNNDLYHITAYNKLISTHEYTH*I*PA-LY-NTQTHTHFV-TRAH---HKNTHSH 408
LH H + L + I TH +TH A LY T THTH V T A+ H +TH+H
Sbjct: 56 LHTHTHTHTLSLYWLISLYIHTHTHTHTHTHAVLYLPTHTHTHAVLTLAYLPIHTHTHTH 115
Query: 407 M*RTHNTSTQFLIFHT 360
TH S L HT
Sbjct: 116 ---THTLSCTSLYTHT 128
>AF269101-1|AAG33130.1| 667|Homo sapiens midline 1 protein.
Length = 667
Score = 32.3 bits (70), Expect = 1.8
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Frame = -3
Query: 341 YMVIGIQNGYPYVVM-----DIGD-SSEPGQDPARSPLTRWLPTTAGTKSSLT-GNSTEP 183
Y V G+Q+G Y+ M G SSEPG+ S + P +A K ++ N T
Sbjct: 448 YTVHGLQSGTKYIFMVKAINQAGSRSSEPGKLKTNSQPFKLDPKSAHRKLKVSHDNLTVE 507
Query: 182 RDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN--QVLLFFRTYAPNGLIY 30
RD+ S +S E RF +G +AG ++ + +V++ T+ GL Y
Sbjct: 508 RDESSSKKSHTPE-RFTSQGSYGVAGNVFIDSGRHYWEVVISGSTWYAIGLAY 559
>AF230976-1|AAG50191.1| 667|Homo sapiens tripartite motif protein
TRIM18 alpha protein.
Length = 667
Score = 32.3 bits (70), Expect = 1.8
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Frame = -3
Query: 341 YMVIGIQNGYPYVVM-----DIGD-SSEPGQDPARSPLTRWLPTTAGTKSSLT-GNSTEP 183
Y V G+Q+G Y+ M G SSEPG+ S + P +A K ++ N T
Sbjct: 448 YTVHGLQSGTKYIFMVKAINQAGSRSSEPGKLKTNSQPFKLDPKSAHRKLKVSHDNLTVE 507
Query: 182 RDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN--QVLLFFRTYAPNGLIY 30
RD+ S +S E RF +G +AG ++ + +V++ T+ GL Y
Sbjct: 508 RDESSSKKSHTPE-RFTSQGSYGVAGNVFIDSGRHYWEVVISGSTWYAIGLAY 559
>AF041210-1|AAC33002.1| 630|Homo sapiens midline 1 fetal kidney
isoform 3 protein.
Length = 630
Score = 32.3 bits (70), Expect = 1.8
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Frame = -3
Query: 341 YMVIGIQNGYPYVVM-----DIGD-SSEPGQDPARSPLTRWLPTTAGTKSSLT-GNSTEP 183
Y V G+Q+G Y+ M G SSEPG+ S + P +A K ++ N T
Sbjct: 411 YTVHGLQSGTKYIFMVKAINQAGSRSSEPGKLKTNSQPFKLDPKSAHRKLKVSHDNLTVE 470
Query: 182 RDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN--QVLLFFRTYAPNGLIY 30
RD+ S +S E RF +G +AG ++ + +V++ T+ GL Y
Sbjct: 471 RDESSSKKSHTPE-RFTSQGSYGVAGNVFIDSGRHYWEVVISGSTWYAIGLAY 522
>AF041209-1|AAC33001.1| 667|Homo sapiens midline 1 fetal kidney
isoform 2 protein.
Length = 667
Score = 32.3 bits (70), Expect = 1.8
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Frame = -3
Query: 341 YMVIGIQNGYPYVVM-----DIGD-SSEPGQDPARSPLTRWLPTTAGTKSSLT-GNSTEP 183
Y V G+Q+G Y+ M G SSEPG+ S + P +A K ++ N T
Sbjct: 448 YTVHGLQSGTKYIFMVKAINQAGSRSSEPGKLKTNSQPFKLDPKSAHRKLKVSHDNLTVE 507
Query: 182 RDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN--QVLLFFRTYAPNGLIY 30
RD+ S +S E RF +G +AG ++ + +V++ T+ GL Y
Sbjct: 508 RDESSSKKSHTPE-RFTSQGSYGVAGNVFIDSGRHYWEVVISGSTWYAIGLAY 559
>AF041208-1|AAC33000.1| 667|Homo sapiens midline 1 fetal kidney
isoform 1 protein.
Length = 667
Score = 32.3 bits (70), Expect = 1.8
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Frame = -3
Query: 341 YMVIGIQNGYPYVVM-----DIGD-SSEPGQDPARSPLTRWLPTTAGTKSSLT-GNSTEP 183
Y V G+Q+G Y+ M G SSEPG+ S + P +A K ++ N T
Sbjct: 448 YTVHGLQSGTKYIFMVKAINQAGSRSSEPGKLKTNSQPFKLDPKSAHRKLKVSHDNLTVE 507
Query: 182 RDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN--QVLLFFRTYAPNGLIY 30
RD+ S +S E RF +G +AG ++ + +V++ T+ GL Y
Sbjct: 508 RDESSSKKSHTPE-RFTSQGSYGVAGNVFIDSGRHYWEVVISGSTWYAIGLAY 559
>AF035360-1|AAB99951.1| 667|Homo sapiens ring finger protein
protein.
Length = 667
Score = 32.3 bits (70), Expect = 1.8
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Frame = -3
Query: 341 YMVIGIQNGYPYVVM-----DIGD-SSEPGQDPARSPLTRWLPTTAGTKSSLT-GNSTEP 183
Y V G+Q+G Y+ M G SSEPG+ S + P +A K ++ N T
Sbjct: 448 YTVHGLQSGTKYIFMVKAINQAGSRSSEPGKLKTNSQPFKLDPKSAHRKLKVSHDNLTVE 507
Query: 182 RDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN--QVLLFFRTYAPNGLIY 30
RD+ S +S E RF +G +AG ++ + +V++ T+ GL Y
Sbjct: 508 RDESSSKKSHTPE-RFTSQGSYGVAGNVFIDSGRHYWEVVISGSTWYAIGLAY 559
>AK123603-1|BAC85658.1| 143|Homo sapiens protein ( Homo sapiens
cDNA FLJ41609 fis, clone CTONG3001560. ).
Length = 143
Score = 31.9 bits (69), Expect = 2.4
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Frame = +2
Query: 284 CPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCECVTCVSVCFYD-VRVLRSECEF 460
C S H +R C + C R R L V CV C +C V V C F
Sbjct: 14 CVHVCSYHVCMRM-CVTVCVRALVRAHVCLVTVCLRLFCV-CAHMCLVPCVCVCAWACVF 71
Query: 461 VCYIVPVIFSACTHECL*VYC 523
C + ++ CTH CL C
Sbjct: 72 SCCVRVLVLCVCTHVCLVTVC 92
>AK126537-1|BAC86582.1| 467|Homo sapiens protein ( Homo sapiens
cDNA FLJ44573 fis, clone UTERU3016789, moderately
similar to SH3 domain-binding protein 3BP-2. ).
Length = 467
Score = 31.5 bits (68), Expect = 3.1
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 378 LC*SVVSALHV*VCV-FMMCACYEVSVSLCVI*CRLYLVRVLMSAYKFIVCC 530
+C S +HV VC +C C VS+++C C+ V + +S + C
Sbjct: 41 VCLSAYPCVHVCVCQRIRVCMCVSVSLTMCACVCQCIRVCICVSVHVSACAC 92
>AK124073-1|BAC85767.1| 536|Homo sapiens protein ( Homo sapiens
cDNA FLJ42079 fis, clone SYNOV2021320, highly similar
to SH3 DOMAIN-BINDING PROTEIN 3BP-2. ).
Length = 536
Score = 31.5 bits (68), Expect = 3.1
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 378 LC*SVVSALHV*VCV-FMMCACYEVSVSLCVI*CRLYLVRVLMSAYKFIVCC 530
+C S +HV VC +C C VS+++C C+ V + +S + C
Sbjct: 41 VCLSAYPCVHVCVCQRIRVCMCVSVSLTMCACVCQCIRVCICVSVHVSACAC 92
>AK096940-1|BAC04906.1| 226|Homo sapiens protein ( Homo sapiens
cDNA FLJ39621 fis, clone SMINT2001158. ).
Length = 226
Score = 31.5 bits (68), Expect = 3.1
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -2
Query: 516 TYKHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLH 337
T+ HS H L + + HT +L + T H TH++ H T+++I+H L +H
Sbjct: 26 THIHSHTHPLTHSHPLSHTYPLTLTHIHT---HPHTHISTHTHPLTVTHITHTHLLTHIH 82
>AB076353-1|BAD01540.1| 365|Homo sapiens keratin associated protein
protein.
Length = 365
Score = 31.5 bits (68), Expect = 3.1
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Frame = +2
Query: 224 RLSATILSMETSPDPGQVRSCPRC-PSLHTGIRSECRSPC--SRPKKR*CEILEIVLK-- 388
R+S+ + P P Q C PS +S C+ C S P ++ C + + K
Sbjct: 62 RVSSPCCPVTCEPSPCQSGCTSSCTPSCCQ--QSSCQLACCASSPCQQAC-CVPVCCKTV 118
Query: 389 CCECVTCVSVCFYDVRVL-RSECEFVCYIVPVIFSACTHECL*VYC 523
CC+ V CVSVC D +S C+ C AC C+ V C
Sbjct: 119 CCKPVCCVSVCCGDSSCCQQSSCQSACCTSSPCQQAC---CVPVCC 161
>AK128797-1|BAC87611.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ45585 fis, clone BRTHA3013882. ).
Length = 201
Score = 31.1 bits (67), Expect = 4.1
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 378 LC*SVVSALHV*VCVFM-MCACYEVSVSLCVI*CRLYLVRVLMSAYKFIVCCNMVQIIVM 554
LC SV + V VC+ + +C C V V +CV C + V + F+ C V + V
Sbjct: 119 LCVSVCFCVSVCVCLCVCVCICVFVCVWVCVCLCVCVCLCVCLCLCVFLCVCVFVSVCVS 178
Query: 555 LLI 563
+ +
Sbjct: 179 VCV 181
Score = 30.7 bits (66), Expect = 5.5
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +2
Query: 392 CECVTCVSVCFYDVRVLRSECEFVCYIVPVIFSACTHECL 511
C CV CVSVC V C +C V V C H C+
Sbjct: 51 CLCV-CVSVCLCVCLVSVCLCVCLCVCVSVCLCVCLHLCV 89
Score = 30.7 bits (66), Expect = 5.5
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +2
Query: 362 CEILEIVLKCCECV-TCVSVCF-YDVRVLRSECEFVCYIVPVIFSACTHECL 511
C + + L C CV CVSVCF V V C +C V V C C+
Sbjct: 104 CLCVCVCLHLCVCVGLCVSVCFCVSVCVCLCVCVCICVFVCVWVCVCLCVCV 155
>AF230977-1|AAG50192.1| 552|Homo sapiens tripartite motif protein
TRIM18 beta protein.
Length = 552
Score = 31.1 bits (67), Expect = 4.1
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Frame = -3
Query: 341 YMVIGIQNGYPYVVM-----DIGD-SSEPGQDPARSPLTRWLPTTAGTKSSLT-GNSTEP 183
Y V G+Q+G Y+ M G SSEPG+ S + P +A K ++ N T
Sbjct: 448 YTVHGLQSGTKYIFMVKAINQAGSRSSEPGKLKTNSQPFKLDPKSAHRKLKVSHDNLTVE 507
Query: 182 RDKLISSQSGPQEYRFDGRGYATMAGRGYL 93
RD+ S +S E RF +G +AG ++
Sbjct: 508 RDESSSKKSHTPE-RFTSQGSYGVAGNVFI 536
>AB065580-1|BAC05810.1| 346|Homo sapiens seven transmembrane helix
receptor protein.
Length = 346
Score = 30.7 bits (66), Expect = 5.5
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 378 LC*SVVSALHV*VCVFM-MCACYEVSVSLCVI*CRLYLVRVLMSAYKFIVCCNMVQIIVM 554
LC VS + V VC+++ +C C VSV +C+ + V +S + + C V + V
Sbjct: 4 LC-DCVSCVSVSVCLYLYVCVCICVSVCVCICVSVCVCICVCVSVFVCVCICVCVCVCVS 62
Query: 555 LLI 563
+ +
Sbjct: 63 MCV 65
Score = 30.3 bits (65), Expect = 7.3
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 378 LC*SVVSALHV*VCVFMMCACYEVSVSLCVI*CRLYLVRVLMSAYKFIVCCNMVQIIVML 557
+C SV + V VCV +C C V V +C+ C V + +S + C V + V +
Sbjct: 25 ICVSVCVCICVSVCV-CICVCVSVFVCVCICVCVCVCVSMCVSISVCVYLCLCVCVSVCV 83
Query: 558 LI 563
+
Sbjct: 84 YV 85
>AY210418-1|AAO34701.1| 3487|Homo sapiens CUB and sushi multiple
domains 2 protein.
Length = 3487
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/76 (27%), Positives = 33/76 (43%)
Frame = -3
Query: 236 LPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFR 57
+P G + +L+ TEP I+ GPQ+ + + + SNQVLL F
Sbjct: 2214 VPIGHGVRLNLSLLQTEPSGDFITIWDGPQQTAPRLGVFTRSMAKKTVQSSSNQVLLKFH 2273
Query: 56 TYAPNGLIYLLKASVF 9
A G I+ + S +
Sbjct: 2274 RDAATGGIFAIAFSAY 2289
>AB212622-1|BAD97692.1| 3631|Homo sapiens CSMD2 protein protein.
Length = 3631
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/76 (27%), Positives = 33/76 (43%)
Frame = -3
Query: 236 LPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFR 57
+P G + +L+ TEP I+ GPQ+ + + + SNQVLL F
Sbjct: 2212 VPIGHGVRLNLSLLQTEPSGDFITIWDGPQQTAPRLGVFTRSMAKKTVQSSSNQVLLKFH 2271
Query: 56 TYAPNGLIYLLKASVF 9
A G I+ + S +
Sbjct: 2272 RDAATGGIFAIAFSAY 2287
>AY024361-1|AAK00583.1| 4911|Homo sapiens MLL3 protein.
Length = 4911
Score = 29.9 bits (64), Expect = 9.6
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -3
Query: 335 VIGIQ-NGYPYVVMDIGDSSEPGQDPARSPLTRWLPTTAGTKSSLTGN--STEPRDKLIS 165
V+G++ + YP D+ E +P SP+ LP+TAG S N TEP +
Sbjct: 4010 VVGVEVSRYP----DLSLVKEEPPEPVPSPIIPILPSTAGKSSESRRNDIKTEPGTLYFA 4065
Query: 164 SQSGP 150
S GP
Sbjct: 4066 SPFGP 4070
>AL833924-1|CAD38780.1| 1033|Homo sapiens hypothetical protein
protein.
Length = 1033
Score = 29.9 bits (64), Expect = 9.6
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -3
Query: 335 VIGIQ-NGYPYVVMDIGDSSEPGQDPARSPLTRWLPTTAGTKSSLTGN--STEPRDKLIS 165
V+G++ + YP D+ E +P SP+ LP+TAG S N TEP +
Sbjct: 132 VVGVEVSRYP----DLSLVKEEPPEPVPSPIIPILPSTAGKSSESRRNDIKTEPGTLYFA 187
Query: 164 SQSGP 150
S GP
Sbjct: 188 SPFGP 192
>AF264750-1|AAF74766.2| 4025|Homo sapiens ALR-like protein protein.
Length = 4025
Score = 29.9 bits (64), Expect = 9.6
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -3
Query: 335 VIGIQ-NGYPYVVMDIGDSSEPGQDPARSPLTRWLPTTAGTKSSLTGN--STEPRDKLIS 165
V+G++ + YP D+ E +P SP+ LP+TAG S N TEP +
Sbjct: 3128 VVGVEVSRYP----DLSLVKEEPPEPVPSPIIPILPSTAGKSSESRRNDIKTEPGTLYFA 3183
Query: 164 SQSGP 150
S GP
Sbjct: 3184 SPFGP 3188
>AC006017-3|AAD45822.1| 1813|Homo sapiens WUGSC:H_DJ0981O07.3 protein.
Length = 1813
Score = 29.9 bits (64), Expect = 9.6
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -3
Query: 335 VIGIQ-NGYPYVVMDIGDSSEPGQDPARSPLTRWLPTTAGTKSSLTGN--STEPRDKLIS 165
V+G++ + YP D+ E +P SP+ LP+TAG S N TEP +
Sbjct: 916 VVGVEVSRYP----DLSLVKEEPPEPVPSPIIPILPSTAGKSSESRRNDIKTEPGTLYFA 971
Query: 164 SQSGP 150
S GP
Sbjct: 972 SPFGP 976
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,051,174
Number of Sequences: 237096
Number of extensions: 2900441
Number of successful extensions: 6669
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 6001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6608
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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