Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1188
         (721 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M96388-1|AAA28662.1| 3712|Drosophila melanogaster laminin A chai...    44   2e-04
M75882-1|AAA28661.1| 1951|Drosophila melanogaster laminin A chai...    44   2e-04
L07288-1|AAC37178.1| 3712|Drosophila melanogaster laminin A prot...    44   2e-04
AE014296-1101|AAF50672.2| 3712|Drosophila melanogaster CG10236-P...    44   2e-04
BT025811-1|ABF85711.1|  237|Drosophila melanogaster IP01956p pro...    29   6.4  
AE013599-112|AAF57306.1|  237|Drosophila melanogaster CG14468-PA...    29   6.4  
BT001697-1|AAN71452.1|  604|Drosophila melanogaster RE59755p pro...    29   8.4  
AY060464-1|AAL25503.1|  604|Drosophila melanogaster SD04616p pro...    29   8.4  
AY058408-1|AAL13637.1|  576|Drosophila melanogaster GH18329p pro...    29   8.4  
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    29   8.4  
AE014134-363|AAN10450.1|  576|Drosophila melanogaster CG7082-PD,...    29   8.4  
AE014134-362|AAN10449.1|  576|Drosophila melanogaster CG7082-PC,...    29   8.4  
AE014134-361|AAN10448.1|  576|Drosophila melanogaster CG7082-PB,...    29   8.4  
AE014134-360|AAF51286.1|  576|Drosophila melanogaster CG7082-PA,...    29   8.4  
AE014134-279|AAN10454.1|  604|Drosophila melanogaster CG31666-PD...    29   8.4  
AE014134-278|AAF51350.2|  604|Drosophila melanogaster CG31666-PC...    29   8.4  
AE014134-277|AAF51352.3|  604|Drosophila melanogaster CG31666-PA...    29   8.4  
AE014134-276|AAF51351.2|  794|Drosophila melanogaster CG31666-PB...    29   8.4  

>M96388-1|AAA28662.1| 3712|Drosophila melanogaster laminin A chain
            protein.
          Length = 3712

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = -3

Query: 719  PDTVDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTMLRRTKSVCLKII 576
            P+    ++T T++S YFRT E  GF+LYLGN   T  +    V ++I+
Sbjct: 2688 PEKTKLLATRTNLSTYFRTTEPSGFLLYLGNDNKTAQKNNDFVAVEIV 2735



 Score = 34.3 bits (75), Expect = 0.17
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 267  GSGEVSIDKMVADNRWYQVIVDR 199
            G   ++ DK VAD RWYQ +VDR
Sbjct: 2748 GPERITSDKYVADGRWYQAVVDR 2770


>M75882-1|AAA28661.1| 1951|Drosophila melanogaster laminin A chain
            protein.
          Length = 1951

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = -3

Query: 719  PDTVDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTMLRRTKSVCLKII 576
            P+    ++T T++S YFRT E  GF+LYLGN   T  +    V ++I+
Sbjct: 927  PEKTKLLATRTNLSTYFRTTEPSGFLLYLGNDNKTAQKNNDFVAVEIV 974



 Score = 34.3 bits (75), Expect = 0.17
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 267  GSGEVSIDKMVADNRWYQVIVDR 199
            G   ++ DK VAD RWYQ +VDR
Sbjct: 987  GPERITSDKYVADGRWYQAVVDR 1009


>L07288-1|AAC37178.1| 3712|Drosophila melanogaster laminin A protein.
          Length = 3712

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = -3

Query: 719  PDTVDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTMLRRTKSVCLKII 576
            P+    ++T T++S YFRT E  GF+LYLGN   T  +    V ++I+
Sbjct: 2688 PEKTKLLATRTNLSTYFRTTEPSGFLLYLGNDNKTAQKNNDFVAVEIV 2735



 Score = 34.3 bits (75), Expect = 0.17
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 267  GSGEVSIDKMVADNRWYQVIVDR 199
            G   ++ DK VAD RWYQ +VDR
Sbjct: 2748 GPERITSDKYVADGRWYQAVVDR 2770


>AE014296-1101|AAF50672.2| 3712|Drosophila melanogaster CG10236-PA
            protein.
          Length = 3712

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = -3

Query: 719  PDTVDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTMLRRTKSVCLKII 576
            P+    ++T T++S YFRT E  GF+LYLGN   T  +    V ++I+
Sbjct: 2688 PEKTKLLATRTNLSTYFRTTEPSGFLLYLGNDNKTAQKNNDFVAVEIV 2735



 Score = 34.3 bits (75), Expect = 0.17
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 267  GSGEVSIDKMVADNRWYQVIVDR 199
            G   ++ DK VAD RWYQ +VDR
Sbjct: 2748 GPERITSDKYVADGRWYQAVVDR 2770


>BT025811-1|ABF85711.1|  237|Drosophila melanogaster IP01956p
           protein.
          Length = 237

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 56  CGRREALD*IEASNNLGQPSWHIHGHRTCTLEGQTARRSIYPWVL 190
           CGR   +D   AS+N   P     G + CT  G TA+ S Y W +
Sbjct: 143 CGRSSVVDYQTASSNRTWPIGSCCGKQNCT--GCTAKLSQYLWTI 185


>AE013599-112|AAF57306.1|  237|Drosophila melanogaster CG14468-PA
           protein.
          Length = 237

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 56  CGRREALD*IEASNNLGQPSWHIHGHRTCTLEGQTARRSIYPWVL 190
           CGR   +D   AS+N   P     G + CT  G TA+ S Y W +
Sbjct: 143 CGRSSVVDYQTASSNRTWPIGSCCGKQNCT--GCTAKLSQYLWTI 185


>BT001697-1|AAN71452.1|  604|Drosophila melanogaster RE59755p
           protein.
          Length = 604

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = -3

Query: 287 DSSEPGQDPARSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMA 108
           D S+  + P  SP+ +  P      SS +  +    D + S ++ PQ  R++    +T A
Sbjct: 345 DGSKSSECP--SPINK--PPYHRPSSSASSTAPTEADTMHSERASPQSSRYENHSPSTTA 400

Query: 107 GRGYLTPQSNQVL 69
           G G  T    +++
Sbjct: 401 GNGNATSSLERIV 413


>AY060464-1|AAL25503.1|  604|Drosophila melanogaster SD04616p
           protein.
          Length = 604

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = -3

Query: 287 DSSEPGQDPARSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMA 108
           D S+  + P  SP+ +  P      SS +  +    D + S ++ PQ  R++    +T A
Sbjct: 345 DGSKSSECP--SPINK--PPYHRPSSSASSTAPTEADTMHSERASPQSSRYENHSPSTTA 400

Query: 107 GRGYLTPQSNQVL 69
           G G  T    +++
Sbjct: 401 GNGNATSSLERIV 413


>AY058408-1|AAL13637.1|  576|Drosophila melanogaster GH18329p
           protein.
          Length = 576

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = -3

Query: 278 EPGQDPARSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQ 159
           E  ++P RSP      +   +++SL+ + T+PRDKL++S+
Sbjct: 217 EQRREPRRSPTNSIASSMYSSQTSLSSH-TQPRDKLMASK 255


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
            protein.
          Length = 23015

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 263  DPGQVRSCPRCPSLHTGIRSECRSPCSR 346
            DP +  S   CP+  +   S CRSPC R
Sbjct: 2434 DPNECLSDADCPASASCQNSRCRSPCER 2461


>AE014134-363|AAN10450.1|  576|Drosophila melanogaster CG7082-PD,
           isoform D protein.
          Length = 576

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = -3

Query: 278 EPGQDPARSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQ 159
           E  ++P RSP      +   +++SL+ + T+PRDKL++S+
Sbjct: 217 EQRREPRRSPTNSIASSMYSSQTSLSSH-TQPRDKLMASK 255


>AE014134-362|AAN10449.1|  576|Drosophila melanogaster CG7082-PC,
           isoform C protein.
          Length = 576

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = -3

Query: 278 EPGQDPARSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQ 159
           E  ++P RSP      +   +++SL+ + T+PRDKL++S+
Sbjct: 217 EQRREPRRSPTNSIASSMYSSQTSLSSH-TQPRDKLMASK 255


>AE014134-361|AAN10448.1|  576|Drosophila melanogaster CG7082-PB,
           isoform B protein.
          Length = 576

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = -3

Query: 278 EPGQDPARSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQ 159
           E  ++P RSP      +   +++SL+ + T+PRDKL++S+
Sbjct: 217 EQRREPRRSPTNSIASSMYSSQTSLSSH-TQPRDKLMASK 255


>AE014134-360|AAF51286.1|  576|Drosophila melanogaster CG7082-PA,
           isoform A protein.
          Length = 576

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = -3

Query: 278 EPGQDPARSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQ 159
           E  ++P RSP      +   +++SL+ + T+PRDKL++S+
Sbjct: 217 EQRREPRRSPTNSIASSMYSSQTSLSSH-TQPRDKLMASK 255


>AE014134-279|AAN10454.1|  604|Drosophila melanogaster CG31666-PD,
           isoform D protein.
          Length = 604

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = -3

Query: 287 DSSEPGQDPARSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMA 108
           D S+  + P  SP+ +  P      SS +  +    D + S ++ PQ  R++    +T A
Sbjct: 345 DGSKSSECP--SPINK--PPYHRPSSSASSTAPTEADTMHSERASPQSSRYENHSPSTTA 400

Query: 107 GRGYLTPQSNQVL 69
           G G  T    +++
Sbjct: 401 GNGNATSSLERIV 413


>AE014134-278|AAF51350.2|  604|Drosophila melanogaster CG31666-PC,
           isoform C protein.
          Length = 604

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = -3

Query: 287 DSSEPGQDPARSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMA 108
           D S+  + P  SP+ +  P      SS +  +    D + S ++ PQ  R++    +T A
Sbjct: 345 DGSKSSECP--SPINK--PPYHRPSSSASSTAPTEADTMHSERASPQSSRYENHSPSTTA 400

Query: 107 GRGYLTPQSNQVL 69
           G G  T    +++
Sbjct: 401 GNGNATSSLERIV 413


>AE014134-277|AAF51352.3|  604|Drosophila melanogaster CG31666-PA,
           isoform A protein.
          Length = 604

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = -3

Query: 287 DSSEPGQDPARSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMA 108
           D S+  + P  SP+ +  P      SS +  +    D + S ++ PQ  R++    +T A
Sbjct: 345 DGSKSSECP--SPINK--PPYHRPSSSASSTAPTEADTMHSERASPQSSRYENHSPSTTA 400

Query: 107 GRGYLTPQSNQVL 69
           G G  T    +++
Sbjct: 401 GNGNATSSLERIV 413


>AE014134-276|AAF51351.2|  794|Drosophila melanogaster CG31666-PB,
           isoform B protein.
          Length = 794

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = -3

Query: 287 DSSEPGQDPARSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMA 108
           D S+  + P  SP+ +  P      SS +  +    D + S ++ PQ  R++    +T A
Sbjct: 345 DGSKSSECP--SPINK--PPYHRPSSSASSTAPTEADTMHSERASPQSSRYENHSPSTTA 400

Query: 107 GRGYLTPQSNQVL 69
           G G  T    +++
Sbjct: 401 GNGNATSSLERIV 413


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,180,164
Number of Sequences: 53049
Number of extensions: 871598
Number of successful extensions: 3012
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2993
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3211306956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)