Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1188
(721 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 34 0.082
At3g02890.1 68416.m00284 PHD finger protein-related contains low... 30 1.8
At2g16750.1 68415.m01921 protein kinase family protein contains ... 30 1.8
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 29 2.3
At4g36195.1 68417.m05150 serine carboxypeptidase S28 family prot... 28 5.4
At4g36190.1 68417.m05149 serine carboxypeptidase S28 family prot... 28 7.2
At1g64620.1 68414.m07325 Dof-type zinc finger domain-containing ... 28 7.2
At3g14730.1 68416.m01862 pentatricopeptide (PPR) repeat-containi... 27 9.5
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 34.3 bits (75), Expect = 0.082
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 305 VVMDIGDSSEPGQDPARSPLTRWLPTTAGTKS-SLTGNSTEPRDKLISSQSGPQE 144
VV +G S P P +SP T PTT+ TKS ++T +T P +S S P E
Sbjct: 15 VVAGVGGQS-PISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVE 68
>At3g02890.1 68416.m00284 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 963
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/80 (31%), Positives = 36/80 (45%)
Frame = -2
Query: 465 HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDRHSERIPVCSDGHRG 286
H S + S T + S+ S+ISH L R H D+ S ++ C+D H
Sbjct: 72 HNTSSEASHLVNSNHDTSSENAESKEIIRSSDISHGPLLDRPHKDQDSMKVDSCND-H-- 128
Query: 285 QLRTWPGSGEVSIDKMVADN 226
Q R+ G G+V +K A N
Sbjct: 129 QARSTLGQGKVK-EKSGAKN 147
>At2g16750.1 68415.m01921 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 617
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 371 LEIVLKCCECVTCVSVCFYDVRVLRSECEFVCYIVPVI 484
LE V K +CV V VCF R L+S+ Y+ P I
Sbjct: 32 LEEVAKHGDCVVVVHVCFTYYRALKSKSSLDRYLKPYI 69
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/92 (26%), Positives = 38/92 (41%)
Frame = -3
Query: 470 YNTQTHTHFVTRAHHKNTHSHM*RTHNTSTQFLIFHTTVF*DDYMVIGIQNGYPYVVMDI 291
Y T H V R +S + TH S LI++T D Y V+G + P +++ I
Sbjct: 147 YKTIIHPGEVNRIRELPQNSKIVATHTDSPDILIWNTETQPDRYAVLGAPDSRPDLLL-I 205
Query: 290 GDSSEPGQDPARSPLTRWLPTTAGTKSSLTGN 195
G + A P ++ + KS + N
Sbjct: 206 GHQDDAEFALAMCPTEPFVLSGGKDKSVILWN 237
>At4g36195.1 68417.m05150 serine carboxypeptidase S28 family protein
contains Pfam PF05577: Serine carboxypeptidase S28
Length = 488
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +2
Query: 191 WSYLSTMTWYQRLSATILSMETSPDPGQVRSCPRCPSLHTGIRSECRSPCSRPKKR 358
W + S T L + I++ +R CP+ P + G C SP + K R
Sbjct: 411 WRHASKQTSSPELPSYIVTCHNCGHGSDLRGCPQSPMVIGGDSKNCSSPDAVNKVR 466
>At4g36190.1 68417.m05149 serine carboxypeptidase S28 family protein
contains Pfam PF05577: Serine carboxypeptidase S28
Length = 493
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/70 (27%), Positives = 27/70 (38%)
Frame = +2
Query: 191 WSYLSTMTWYQRLSATILSMETSPDPGQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CEI 370
W + S T L + I++ +R CP+ + G C SP + K R I
Sbjct: 422 WRHASKQTSSPDLPSYIMTCHNCGHGSDLRGCPQSAMVIEGDAQNCSSPDAVNKVRQHMI 481
Query: 371 LEIVLKCCEC 400
I L EC
Sbjct: 482 KHIDLWLSEC 491
>At1g64620.1 68414.m07325 Dof-type zinc finger domain-containing
protein similar to Dof zinc finger protein GB:CAA08755
GI:3341468 from [Nicotiana tabacum]
Length = 352
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 233 ATILSMETSPDPGQVRSCPRCPSLHT 310
AT + + P+ Q +CPRC SL+T
Sbjct: 34 ATPVERKARPEKDQALNCPRCNSLNT 59
>At3g14730.1 68416.m01862 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 653
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 302 VMDIGDSSEPGQDPARSPLTRWLPTTAGTKSSLTGNSTEPRDKLI 168
V+D+ D+ Q+ ++P W+ G + TGN T P K I
Sbjct: 589 VLDVRDAMRQ-QNVKKTPGCSWIVLKNGVHTFFTGNQTHPEFKSI 632
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,116,989
Number of Sequences: 28952
Number of extensions: 390049
Number of successful extensions: 1062
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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