Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1185
         (760 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    26   0.28 
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    24   1.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.6  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   8.1  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    21   8.1  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   8.1  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    21   8.1  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 283 DHRPGDCCHSSSCRCNLWGSNCRC 354
           D RPG C ++ +C   + G  C+C
Sbjct: 263 DCRPGACHNNGTCLDKVGGFECKC 286


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 612 NTYKCTKILKMKFGLIVVFVLL 677
           N  KC+++ K + G I+ FVLL
Sbjct: 84  NCSKCSEVQKKQAGKILTFVLL 105


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 286 HRPGDCCHSSSCRCNLWGSN 345
           HRPG CC   +C  +L+ S+
Sbjct: 99  HRPGRCC--KTCPGDLYDSD 116


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 134 YIDPGDDDLEVNLPDYGE 187
           YI PGD  LE   PD  E
Sbjct: 404 YIRPGDTPLEDINPDLAE 421


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 316 SCRCNLWGSNC 348
           +C C+LW  NC
Sbjct: 219 NCLCSLWFINC 229


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 134 YIDPGDDDLEVNLPDYGE 187
           YI PGD  LE   PD  E
Sbjct: 229 YIRPGDTPLEDINPDLAE 246


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 316 SCRCNLWGSNC 348
           +C C+LW  NC
Sbjct: 219 NCLCSLWFINC 229


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,962
Number of Sequences: 336
Number of extensions: 2996
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)