Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1185
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    28   1.3  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    27   2.2  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   5.1  

>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 384 VGDNDRSSSXAATNSSQPT*PPL--HRKPQHSPTQNGPV 494
           V D   S   +A + + P+ PP+  H KP+ S TQ+ PV
Sbjct: 319 VSDAQNSLGQSAVDLTTPSSPPIPRHTKPKLSTTQSTPV 357


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 134 YIDPGDDDLEVNLPDYGEDPADLQLL--QDVGKRSSLIYVF 250
           YIDPG DD  +  P+  E P DL LL   D+     L+Y +
Sbjct: 26  YIDPGSDD-SLKHPEVPEQP-DLILLSHSDLAHIGGLVYAY 64


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 702 SINQSKRELTKRKQQLNRISFSKFLYIYKCSKNISKLKYKS 580
           +IN+S +  TK  Q+L     SK  Y +     ISK K+ S
Sbjct: 156 NINESYKNETKSNQRLGEDVPSKKKYPHSMDAEISKFKWDS 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,925
Number of Sequences: 5004
Number of extensions: 49270
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)