Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1185
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0695 + 5730932-5731198 31 1.00
05_04_0286 + 19833114-19834053,19834149-19834165 31 1.3
03_02_0283 - 7078754-7078856,7079358-7079431,7079995-7080090,708... 30 2.3
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969... 30 2.3
09_06_0111 - 20924838-20924969,20925147-20925290,20925391-209254... 29 4.0
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 29 4.0
03_02_0249 - 6792210-6792215,6794332-6794607,6794692-6795180,679... 29 5.3
05_06_0051 - 25190803-25191216,25191301-25191891,25193248-251933... 28 7.0
06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560 28 9.3
04_03_1035 - 21887562-21890030 28 9.3
>11_01_0695 + 5730932-5731198
Length = 88
Score = 31.1 bits (67), Expect = 1.00
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +1
Query: 232 VADLRFQAACVRRGGNCDHRPGDCCHSSSCRCNL---WGSNC 348
V + AC+ GG C RP DCC + C + +GS C
Sbjct: 45 VVSAESKLACLPAGGFCMFRPMDCCGNCGCLYPVGVCYGSRC 86
>05_04_0286 + 19833114-19834053,19834149-19834165
Length = 318
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +1
Query: 235 ADLRFQAACVRRGGNCDHRPGDCCHSSSCRCNLWGSNCRC 354
A+ F AC GG C H GD H C C W S C
Sbjct: 247 ANRGFCGACRATGGVCGH-DGDS-HGDLCLCGDWNSTSNC 284
>03_02_0283 -
7078754-7078856,7079358-7079431,7079995-7080090,
7080145-7080270,7080856-7080939,7081458-7081506,
7081630-7081688,7081908-7081925,7082141-7082620
Length = 362
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +1
Query: 397 TGAPLKRRPTPASRLDRRSTGSHNIRQHKTDPLRSYFPF----YSFT*SLII 540
TGAP+ RP PAS +D R + N + + +F + YS T S I+
Sbjct: 238 TGAPILPRPLPASVVDSRISEKDNDAEKENSEEEKHFSYANSSYSITLSYIL 289
>01_06_1202 +
35396165-35396260,35396398-35396549,35396694-35396938,
35397044-35398350
Length = 599
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 594 VLKYFWNTYKCTKILKMKFGLIVVFVL 674
V +Y W TK+ K+KFG +V VL
Sbjct: 463 VPRYLWQPVPATKLYKLKFGSVVQIVL 489
>09_06_0111 -
20924838-20924969,20925147-20925290,20925391-20925453,
20925993-20926116,20926779-20927005,20927088-20927255,
20927348-20927498,20927567-20927889
Length = 443
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = -3
Query: 299 SPGRWSQLPPRRTQAA*KRRSATIVSLHPVTTANRLDPPRSQASSLPDHRLRDQ 138
SP R S PP R AA RS + S P PP S+ S++ D L D+
Sbjct: 40 SPSRASCAPPLRASAARTLRSRVVASAAPAMQ----PPPASRVSTVVDVDLGDR 89
>06_03_0478 - 21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 134 YIDP-GDDDLEVNLPDYGEDPADLQLLQD 217
+++P D+ +E PDY EDP +++L +D
Sbjct: 1193 HVEPVADEKMEDEEPDYEEDPEEVELYED 1221
>03_02_0249 -
6792210-6792215,6794332-6794607,6794692-6795180,
6795832-6795900,6797316-6797403,6798193-6798224,
6799277-6799308,6799412-6799646
Length = 408
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 226 TIVADLRFQAACVRRGGNCDHRPGDCCHSSSCRCNLWGSNCR 351
T++ DL+ + C N H PG C S S R + W S+ R
Sbjct: 69 TVIEDLKLEIDCQHVKKNIAHSPGQQC-SPSERFDEWKSSSR 109
>05_06_0051 -
25190803-25191216,25191301-25191891,25193248-25193317,
25193392-25193443,25195368-25195440,25195557-25195646
Length = 429
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 426 SSQPT*PPLHRKPQHSP 476
+S P PPLHR P+H P
Sbjct: 167 ASPPVPPPLHRNPRHRP 183
>06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560
Length = 546
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 173 ASSLPDHRLRDQYKRHEPILL 111
A +LP H +RD +RH P++L
Sbjct: 56 AGALPHHAMRDLARRHGPLML 76
>04_03_1035 - 21887562-21890030
Length = 822
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = +1
Query: 292 PGDCCHSSSCRCNLW-GSNCRCQRMG 366
PG C S SC C +W GS C G
Sbjct: 327 PGPCAPSKSCSCGVWSGSAQLCAGSG 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,397,479
Number of Sequences: 37544
Number of extensions: 366452
Number of successful extensions: 1053
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -