Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1185
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_31961| Best HMM Match : EGF (HMM E-Value=0)                         28   9.5  
SB_3731| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = +1

Query: 226  TIVADLRFQAACVR--RGGNCDHRPGDCCHSSSCRCNLWGSNCRCQRMGLFQKWG*ETTT 399
            T+  D++F  +C    RG +CD     C  + +      G  CRC+   +  +     T 
Sbjct: 1323 TVPVDMKFNCSCPADYRGQDCDTHLNLCTLTHAATTEKQGFYCRCKADRVGSRCEANVTR 1382

Query: 400  G-APLKRRPTP 429
               PLK R  P
Sbjct: 1383 DFCPLKPRELP 1393


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 393 NDRSSSXAATNSSQPT*PPLHRKPQHSPTQNGP 491
           N+  S    TN++ P  PP ++ P   P  NGP
Sbjct: 352 NNPPSPPPPTNNTPPPPPPTNKPPPPPPPTNGP 384


>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2813

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 211  TGCRETIVADLRFQAACVRRGGNC-DHRPGDCCHSSSCRCNLWGSNC 348
            TG +  IV D    A C+  GG C   R G  CH   C+    G NC
Sbjct: 911  TGTKCEIVPDQCASAPCI-NGGTCKSDRYGYHCH---CKVGFTGKNC 953


>SB_3731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 410

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
 Frame = +1

Query: 241 LRFQAACVRRGGN----CDHRPGDCCHSSSCRCNLW 336
           L     C +RG N    CD +P     +  CRC  W
Sbjct: 369 LNLPVECAKRGTNTRCVCDGKPKGAGFTDRCRCQYW 404


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,689,556
Number of Sequences: 59808
Number of extensions: 400932
Number of successful extensions: 1192
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)