Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1185
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    28   8.3  

>U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical protein
            M02E1.1a protein.
          Length = 1077

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 446  AAPPEATTFANTKRTRCVLIFRSIPSHSP*LFKQFNLVKFK 568
            + P    +F+N     C  +  S P  SP    QFN + FK
Sbjct: 1037 STPAPFPSFSNNPMPACPSMIPSFPVFSPDQLHQFNAINFK 1077


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
           protein F47C12.1 protein.
          Length = 1827

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 187 GSSRFAVVT-GCRETIVADLRFQAACVRRGGNCDHRPGDCCHSSSCRC 327
           GS    V T GC+ T  AD+     C++  G+CDH   +   S  C C
Sbjct: 608 GSPCLEVETLGCQRTSCADIN---ECLKDNGHCDHLCINTQGSYKCDC 652


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,214,522
Number of Sequences: 27780
Number of extensions: 299371
Number of successful extensions: 940
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)