Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1185
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOA...    31   0.83 
At5g37010.1 68418.m04438 expressed protein                             29   2.5  
At5g18700.1 68418.m02219 protein kinase-related contains protein...    28   5.9  
At4g07350.1 68417.m01129 hypothetical protein                          28   5.9  
At3g62680.1 68416.m07041 proline-rich family protein contains pr...    28   7.7  

>At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOAT)
           family protein low similarity to skinny hedgehog
           [Drosophila melanogaster] GI:15420842; contains Pfam
           profile PF03062: MBOAT family
          Length = 533

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 521 SHSP*LFKQFNLVKFKLKNRDLY--FSFEIFLEHL*MYKNFENEIRFNCCFRFVNSRLL 691
           S+ P +   FN+  F   NR +Y  +SF IF +      NF    R++ CF FV  R+L
Sbjct: 142 SYFPYMLWTFNIF-FLFCNR-IYEGYSFSIFGQQFEFLDNFRGTFRWHICFNFVVLRML 198


>At5g37010.1 68418.m04438 expressed protein
          Length = 637

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 378 VGVGDNDRSSSXAATNSSQPT*PPLHRKPQHSPTQNGPVA 497
           VG   + RS S A   +SQP+   L RK +HSP +  P++
Sbjct: 272 VGKAASPRSQSPARA-ASQPSPSKLSRKTEHSPYRRNPLS 310


>At5g18700.1 68418.m02219 protein kinase-related contains protein
           kinase domain, INTERPRO:IPR000719
          Length = 1366

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 419 DQLQPADLTAAPPEATTFANTKRTR 493
           DQ +P D++AAPP A+    T R R
Sbjct: 465 DQSEPMDMSAAPPSASPQLKTHRGR 489


>At4g07350.1 68417.m01129 hypothetical protein
          Length = 330

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 563 FKLKNRDLYFSFEIFLEHL*MYKNFENEIRFNC 661
           FK   ++ Y  +E  ++    YKNF +E+RF C
Sbjct: 90  FKFSGKEDYLEWEKNMDEWFSYKNFLSEMRFVC 122


>At3g62680.1 68416.m07041 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 313

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 435 PT*PPLHRKPQHSPTQNGPV 494
           P+ PP+++ P+H PT   PV
Sbjct: 27  PSSPPVYKSPEHKPTLPSPV 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,380,178
Number of Sequences: 28952
Number of extensions: 273554
Number of successful extensions: 760
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)