Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1184
         (396 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   1.1  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    22   1.9  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   1.9  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   4.4  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    20   7.7  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 165 NTYFYALTIYYLLHTVITELISFQAVNI 82
           N+Y YA T  +    +  + I+   VNI
Sbjct: 65  NSYMYAFTHIFFFFAICCDFIALIVVNI 92


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 288 LINRRYNIFLKITFLMWKLCR 350
           ++N +YN  L I    ++LC+
Sbjct: 18  IVNSKYNSILNIALKNFRLCK 38


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 288 LINRRYNIFLKITFLMWKLCR 350
           ++N +YN  L I    ++LC+
Sbjct: 18  IVNSKYNSILNIALKNFRLCK 38


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 355 KLRHSFHIKNVIL 317
           KLRH F +K ++L
Sbjct: 273 KLRHKFDLKTLVL 285


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 269 VTAQYICYSSFIGIVI 222
           VT Q  C+SSF+ I +
Sbjct: 544 VTYQLYCWSSFLKISV 559


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,271
Number of Sequences: 336
Number of extensions: 1578
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)