Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1184
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    24   7.4  

>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
 Frame = -1

Query: 225 HQRIGILN*MF*KHRINLLQNTYFYALT-IYY---------LLHTVITELISFQAVNI*T 76
           ++R  +L      HR N+ +NT  YALT ++Y         LL T+I  L     + I  
Sbjct: 13  NERSALLPRFLGSHRGNVPENTDTYALTPLFYWIRSTSVGLLLITIICHLFLLLNIFISI 72

Query: 75  LRLSSLSPG 49
             +S LSPG
Sbjct: 73  PIISHLSPG 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,349,394
Number of Sequences: 5004
Number of extensions: 24086
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)