Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1184
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1107 + 10205351-10207519                                         28   2.4  
07_01_1105 - 10173039-10173156,10173715-10173716,10174550-101745...    28   3.1  
06_02_0361 - 15168735-15168754,15168783-15169248                       27   4.1  

>07_01_1107 + 10205351-10207519
          Length = 722

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 39  LMRTPGSMSLIVVFRYLRLEN*SIQLSPYAVG 134
           ++  P S+  ++  RYL L+N  IQ+ P +VG
Sbjct: 621 IVEVPKSIGSLIHLRYLGLDNTGIQMLPESVG 652


>07_01_1105 -
           10173039-10173156,10173715-10173716,10174550-10174584,
           10174696-10174765,10175163-10176707,10176770-10178062
          Length = 1020

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 39  LMRTPGSMSLIVVFRYLRLEN*SIQLSPYAVG 134
           ++  P S+  ++  RYL L+N  IQ+ P +VG
Sbjct: 605 IVEVPKSIGSLIHLRYLGLDNTRIQMLPESVG 636


>06_02_0361 - 15168735-15168754,15168783-15169248
          Length = 161

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 258 LCRDNSYIIVLINRRYNIFLKITFLMWKLCRSL 356
           LC ++++++VLI+      +  TF+  K C+SL
Sbjct: 124 LCENHNHLMVLISNMIRSVVVDTFIYHKYCKSL 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,482,788
Number of Sequences: 37544
Number of extensions: 116073
Number of successful extensions: 193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)