Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1184
         (396 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)                   29   1.0  
SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_33370| Best HMM Match : Pentapeptide_2 (HMM E-Value=6)              28   2.4  
SB_51978| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_7632| Best HMM Match : Hin1 (HMM E-Value=4.7)                       28   3.2  
SB_48674| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          26   9.6  
SB_12505| Best HMM Match : FHA (HMM E-Value=0.097)                     26   9.6  

>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
          Length = 236

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 385 TSYFSHYLFHKLRHSFHIKNVILRNILYLLFINTII*ELSRH 260
           T Y SH   H LRH+ H+      +  + L +   +   SRH
Sbjct: 162 TRYTSHATCHTLRHTLHVTRYTSHSTRHTLHVTRYMSHASRH 203


>SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 274 ELSRHNIFAILVLLALSSKDRDIKLNVLKT*NKFTSK-HLFLCLN 143
           ELS H  F ++VL  +    +D +  + +T  K+TS   L LC N
Sbjct: 39  ELSAHRDFKVVVLTEVDRLTKDAQHALRRTMEKYTSTCRLILCCN 83


>SB_33370| Best HMM Match : Pentapeptide_2 (HMM E-Value=6)
          Length = 366

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = +3

Query: 186 VFKTFNLISRSFDDNANKTRIANILCRDNSYIIVLINRRYNIFLK 320
           +   +N  +R F+ +  +TRI N+  +    I ++I++ +N+ ++
Sbjct: 292 ISNVYNGTTRIFNGHDGRTRIFNVTLQQEYSIFLMISKTFNVMIQ 336


>SB_51978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 379 YFSHYLFHKLRHSFHIKNVILRNILYLLFINTII 278
           +F H  +H LRHS    + I++N + ++FI  +I
Sbjct: 110 HFHHNPYHYLRHSQLHHHPIIKNKVIIIFITILI 143


>SB_7632| Best HMM Match : Hin1 (HMM E-Value=4.7)
          Length = 158

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = -3

Query: 334 IKNVILRNILYLLFINTII*ELSRHNIFAILVLLALSSKDRDIKLN 197
           I N+I+ NI+ ++ IN II  +  +NI  I+++  ++    +I +N
Sbjct: 20  INNIIINNII-IIIINNIIIIIIINNIIIIIIIKIINITINNITIN 64


>SB_48674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 157 FLCLNYLLPTAYGDN*IDQFSSRKYLNTTIKLIE 56
           F+C N L  T   +   DQF+ +K  NTT+ LI+
Sbjct: 39  FVCRNELCSTLKSEIGPDQFAYKKGHNTTMALIK 72


>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/52 (21%), Positives = 24/52 (46%)
 Frame = -3

Query: 394  FFFTSYFSHYLFHKLRHSFHIKNVILRNILYLLFINTII*ELSRHNIFAILV 239
            FFF+    HY F  + H F   ++I  +  + +  +     +  H+ F +++
Sbjct: 991  FFFSIITHHYFFSIITHHFFF-SIITHHFFFSIITHHYFFSIITHHYFFVII 1041


>SB_12505| Best HMM Match : FHA (HMM E-Value=0.097)
          Length = 629

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 23  FFNLNINADPGLNEL 67
           F+ +N+NADP +NEL
Sbjct: 89  FYLVNLNADPAMNEL 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,212,919
Number of Sequences: 59808
Number of extensions: 152587
Number of successful extensions: 230
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)