Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1184
         (396 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT021217-1|AAX33365.1|  352|Drosophila melanogaster RH63642p pro...    28   5.2  
AE014298-852|AAN09162.1|  352|Drosophila melanogaster CG3774-PB,...    28   5.2  
AE014298-851|AAF46131.1|  352|Drosophila melanogaster CG3774-PA,...    28   5.2  

>BT021217-1|AAX33365.1|  352|Drosophila melanogaster RH63642p
           protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -1

Query: 153 YALTIYYLLHTVITELISFQAVNI*TLRLSSLSPGSALILR--LKNIYTIILY 1
           + L ++YLL  V+T+ +   AV + T   +SL+    + LR  +  +++II +
Sbjct: 247 FPLMLFYLLCNVVTQYVCISAVYVLTTECASLTVTLVVTLRKFVSLLFSIIYF 299


>AE014298-852|AAN09162.1|  352|Drosophila melanogaster CG3774-PB,
           isoform B protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -1

Query: 153 YALTIYYLLHTVITELISFQAVNI*TLRLSSLSPGSALILR--LKNIYTIILY 1
           + L ++YLL  V+T+ +   AV + T   +SL+    + LR  +  +++II +
Sbjct: 247 FPLMLFYLLCNVVTQYVCISAVYVLTTECASLTVTLVVTLRKFVSLLFSIIYF 299


>AE014298-851|AAF46131.1|  352|Drosophila melanogaster CG3774-PA,
           isoform A protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -1

Query: 153 YALTIYYLLHTVITELISFQAVNI*TLRLSSLSPGSALILR--LKNIYTIILY 1
           + L ++YLL  V+T+ +   AV + T   +SL+    + LR  +  +++II +
Sbjct: 247 FPLMLFYLLCNVVTQYVCISAVYVLTTECASLTVTLVVTLRKFVSLLFSIIYF 299


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,243,176
Number of Sequences: 53049
Number of extensions: 215969
Number of successful extensions: 382
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1128794130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)