Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1184
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr...    27   6.4  
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr...    27   6.4  
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr...    27   6.4  
AF098992-10|AAC67452.1|  324|Caenorhabditis elegans Hypothetical...    27   6.4  
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform c protein.
          Length = 1576

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 23  FFNLNINADPGLNEL 67
           F+ +N+NADP LNEL
Sbjct: 478 FYLVNMNADPSLNEL 492


>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform b protein.
          Length = 1610

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 23  FFNLNINADPGLNEL 67
           F+ +N+NADP LNEL
Sbjct: 478 FYLVNMNADPSLNEL 492


>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform a protein.
          Length = 1595

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 23  FFNLNINADPGLNEL 67
           F+ +N+NADP LNEL
Sbjct: 478 FYLVNMNADPSLNEL 492


>AF098992-10|AAC67452.1|  324|Caenorhabditis elegans Hypothetical
           protein F53C3.2 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +3

Query: 147 RHKNKCFEVNLFYVFKTFNLISRSFDDNANKTRIANILCRDNSYIIVLINRRYNIFLK 320
           R  NK F+ N+       NL+S S    A+K+ + N+  + NS+ I  +    ++F+K
Sbjct: 9   RLPNKPFQ-NVLKSMSVGNLLSYSMCSEASKSHVTNLKVKINSFEI-NVTENVHLFVK 64


>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical
           protein C35C5.6 protein.
          Length = 1224

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +3

Query: 153 KNKCFEVNLFYVFKTFNLISRSFDDNANKTRIANILCRDNSYIIV 287
           ++ CF + ++Y     ++ +R F+D  N  +  N++ + N  I+V
Sbjct: 581 RHLCFLLQVYYPHLDSSMTTRLFEDLDNLVKATNLVHQLNQTIVV 625


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,304,081
Number of Sequences: 27780
Number of extensions: 127828
Number of successful extensions: 289
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)