Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1184
         (396 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37630.1 68417.m05323 cyclin family protein similar to SP|P42...    27   6.0  
At4g24450.1 68417.m03505 starch excess protein-related similar t...    26   7.9  

>At4g37630.1 68417.m05323 cyclin family protein similar to SP|P42753
           Cyclin delta-3 {Arabidopsis thaliana}; contains Pfam
           profile PF00134: Cyclin, N-terminal domain
          Length = 323

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = -3

Query: 379 YFSHYL--FHKLRHSFHIKNVILRNILYLLFINTII*--ELSRHNIFAILVLLALSSKDR 212
           YF+++L    +  HS     V+LR+   LL +   I   E  +  + A+  LLA SS   
Sbjct: 180 YFNYFLAKISQDNHSVSKDLVLLRSSDSLLALTKEISFTEYRQFVVAAVTTLLASSSTSS 239

Query: 211 DIKLNVLKT*NKFTS 167
           DI+L   +  NKF S
Sbjct: 240 DIRLTREEIANKFGS 254


>At4g24450.1 68417.m03505 starch excess protein-related similar to
           SEX1 [Arabidopsis thaliana] GI:12044358
          Length = 1284

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 219 FDDNANKTRIANILCRDNSYIIVLINRRYNIFLKITFLMW 338
           F   A +T+  ++  R++SY  + IN +   F+ I F++W
Sbjct: 309 FVHGACQTQFTDMSSREHSYQFIDINLKRGGFVGIQFVIW 348


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,493,631
Number of Sequences: 28952
Number of extensions: 107266
Number of successful extensions: 191
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)