Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1182X
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   3.0  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    24   5.3  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    24   7.0  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    24   7.0  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    23   9.2  

>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 174 NHFNNYLYNDQTDNTSYLNLNFSYLHSVTRFICNHI 281
           N F++Y   +     S LNL     HS+T  +  H+
Sbjct: 194 NMFSSYKIGESDSLKSALNLGVPISHSITNDLAYHV 229


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 177 GLTSCKFR*MMTRYFN*CIYKNKTVTITDF 88
           G+T  K+  + T   N C   +KT+T+ +F
Sbjct: 41  GMTITKYMELYTAIHNYCADASKTITVDNF 70


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 64  NPDHAVNLKICNCYSFIFINTLIKITCHHSP 156
           N D   N  +  C+S +FIN L   T    P
Sbjct: 125 NRDQQKNSSLAKCFSRLFINDLHGTTVKRYP 155


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 123 YIN*NNVSSFT*IYKMSNHFNNYLY---NDQTDNTSYLNLNFSYLHSVTR 263
           Y N  N ++FT I   SN  N+  +    + T+ T+  N   +  HS+T+
Sbjct: 212 YCNGTNGTNFTCIVNASNATNSTFWLNGTNSTNGTNSTNSTSTTSHSLTK 261


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 219  SYLNLNFSYLHSVTRFICNHIGEFII 296
            SYL+L     H + R + +H G+ ++
Sbjct: 2513 SYLDLAMKLKHDLIRTVVSHTGKLLV 2538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,093,999
Number of Sequences: 5004
Number of extensions: 17586
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)