Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1182X
(333 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0042 - 9167881-9168075,9168159-9168251,9168328-9168409,916... 29 0.69
07_03_0073 - 13063209-13063403,13063489-13063579,13063707-130637... 28 2.1
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026... 27 2.8
10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658... 27 2.8
08_02_0619 - 19382172-19382366,19382453-19382545,19382621-193827... 27 2.8
01_03_0242 + 14113721-14113966,14114102-14114260,14114495-141148... 27 2.8
06_02_0023 + 10702040-10702364,10702530-10702747,10703643-107041... 27 3.7
06_01_0280 - 2056449-2056487,2056613-2056930,2057025-2057171,205... 27 3.7
06_01_0278 - 2042574-2042612,2042738-2043055,2043150-2043296,204... 27 3.7
08_01_0980 + 9877030-9877307,9877727-9877837,9877928-9878009,987... 27 4.9
>11_03_0042 -
9167881-9168075,9168159-9168251,9168328-9168409,
9168495-9168605,9171653-9171898,9172448-9173073,
9173402-9173422
Length = 457
Score = 29.5 bits (63), Expect = 0.69
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 195 YN-DQTDNTSYLNLNFSYLHSVTRFICNHIGEF 290
YN + D + +NL + + R ICNH+GEF
Sbjct: 399 YNASRFDQKTLINLCTDFCRFIRRDICNHLGEF 431
>07_03_0073 -
13063209-13063403,13063489-13063579,13063707-13063736,
13063827-13063937,13064023-13064260,13064366-13064837,
13065054-13065563,13065993-13066481
Length = 711
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 210 DNTSYLNLNFSYLHSVTRFICNHIGEF 290
D + +NL + R ICNH+GEF
Sbjct: 659 DQKTLINLCVDLCRFIRRDICNHLGEF 685
>12_02_0410 +
18701258-18701327,18701398-18701630,18701782-18702639,
18703006-18703865,18704285-18704395,18704486-18704567,
18704643-18704735,18704795-18704989
Length = 833
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 210 DNTSYLNLNFSYLHSVTRFICNHIGEF 290
D + +NL + R ICNH+GEF
Sbjct: 781 DQKTLINLCADLCRFIRRDICNHLGEF 807
>10_02_0195 +
6578384-6578629,6578710-6579300,6586302-6587512,
6587593-6587844,6587932-6588042,6588133-6588214,
6588299-6588382,6588464-6588658
Length = 923
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 210 DNTSYLNLNFSYLHSVTRFICNHIGEF 290
D + +NL + R ICNH+GEF
Sbjct: 871 DQRTLINLCADLCRFIRRNICNHLGEF 897
>08_02_0619 -
19382172-19382366,19382453-19382545,19382621-19382702,
19382793-19382903,19383323-19383681,19384330-19384533,
19384582-19384756,19384885-19385474,19385555-19385800
Length = 684
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 210 DNTSYLNLNFSYLHSVTRFICNHIGEF 290
D + +NL + R ICNH+GEF
Sbjct: 632 DQKTLINLCTDLCRYIRRDICNHLGEF 658
>01_03_0242 +
14113721-14113966,14114102-14114260,14114495-14114868,
14114939-14115419,14115651-14116192,14116253-14116531,
14116837-14116918,14116994-14117086,14117173-14117367
Length = 816
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 210 DNTSYLNLNFSYLHSVTRFICNHIGEF 290
D + +NL + R ICNH+GEF
Sbjct: 764 DQKTLINLCADLCRFIRRDICNHLGEF 790
>06_02_0023 +
10702040-10702364,10702530-10702747,10703643-10704190,
10704272-10704523,10704611-10704721,10704812-10704893,
10704969-10705061,10705146-10705340
Length = 607
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 195 YN-DQTDNTSYLNLNFSYLHSVTRFICNHIGEF 290
YN + D + +NL + R ICNH+GEF
Sbjct: 549 YNASRFDQKTLINLCTDLRRFIHRDICNHLGEF 581
>06_01_0280 -
2056449-2056487,2056613-2056930,2057025-2057171,
2057273-2058112,2059044-2059117,2059515-2059647,
2059804-2059941
Length = 562
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 82 NLKICNCYSFIFINTLIKITCH 147
NLK SFI + +L+++TCH
Sbjct: 472 NLKSVTVTSFISVKSLVELTCH 493
>06_01_0278 -
2042574-2042612,2042738-2043055,2043150-2043296,
2043382-2044221,2045182-2045282,2045666-2045791,
2047124-2047214
Length = 553
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 82 NLKICNCYSFIFINTLIKITCH 147
NLK SFI + +L+++TCH
Sbjct: 463 NLKSVTVTSFISVKSLVELTCH 484
>08_01_0980 +
9877030-9877307,9877727-9877837,9877928-9878009,
9878085-9878177,9878262-9878456
Length = 252
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 204 QTDNTSYLNLNFSYLHSVTRFICNHIGEF 290
Q D + +NL + R ICNH GEF
Sbjct: 198 QFDQKTLINLCADLCRFIRRDICNHPGEF 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,224,180
Number of Sequences: 37544
Number of extensions: 87504
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -