Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1182X
         (333 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56130| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_35109| Best HMM Match : DUF1174 (HMM E-Value=6)                     27   5.0  
SB_26943| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_56439| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032)             26   8.8  

>SB_56130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 91  ICNCYSFIFINTLIKITCHHSPEFTRCQTTSIITSTMI 204
           +CN    I  NT + I C+ S    R  + SI+ +T +
Sbjct: 18  LCNTSVSILCNTSVSILCNTSVSILRNASVSILRNTSV 55


>SB_35109| Best HMM Match : DUF1174 (HMM E-Value=6)
          Length = 369

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 177 GLTSCKFR*MMTRYFN*CIYKNKTVTITDF 88
           G T   +R     + N CI K KTVT+T F
Sbjct: 331 GTTGLPYRRCFANFMN-CIQKRKTVTVTIF 359


>SB_26943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 168 MSNHFNNYLYNDQTDNTSYLNLNFSYLHSVTRFICNHIGEFIICN*LFYRPTPL 329
           M NH    +YN          LN  Y H++T  +CNH     ICN   ++PT +
Sbjct: 1   MCNHTLTTMYNHTLTTMCNHTLNTMYNHTLTT-MCNHT-LTTICN---HKPTTI 49


>SB_56439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 162 YKMSNHFNNYLYNDQTDNTSYLNLN---FSYLHSVTRFICNHIGEFIICN 302
           + ++NHFN ++++ + +   Y   N   F  L     FI  ++GE   C+
Sbjct: 261 FDLANHFNEWMWDYKHEEAPYYLYNPELFPSLEQQLLFIRTYLGEQTNCH 310


>SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 210 DNTSYLNLNFSYL-HSVTRFICN 275
           D   YL++NF YL H + +++C+
Sbjct: 333 DRLEYLDMNFKYLKHVILKYMCS 355


>SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032)
          Length = 807

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 100 CYSFIFINTL-IKITCHHSPEFTRCQTTSII 189
           C S  F  T  + + CHHSP  +RC +   I
Sbjct: 484 CPSIPFSTTKHVPVHCHHSPRPSRCLSIDTI 514


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,854,066
Number of Sequences: 59808
Number of extensions: 123080
Number of successful extensions: 222
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)