Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1182X
         (333 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-17|CAB02706.2|   72|Caenorhabditis elegans Hypothetical p...    27   4.3  
AF026204-3|AAB71253.1|  424|Caenorhabditis elegans Hypothetical ...    27   4.3  
U58757-2|AAC47915.2|  402|Caenorhabditis elegans Hypothetical pr...    26   5.7  
AF067947-7|AAK68397.2|  295|Caenorhabditis elegans Hypothetical ...    25   10.0 
AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical ...    25   10.0 
AF016445-6|AAC69053.1|  250|Caenorhabditis elegans Hypothetical ...    25   10.0 

>Z81030-17|CAB02706.2|   72|Caenorhabditis elegans Hypothetical
           protein C01G10.4 protein.
          Length = 72

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 108 FYFYKYIN*NNVSSFT*IYKMSNHFNN-YLYNDQTDNTSY 224
           +Y+    N NN + +T  Y   N+ NN Y YN+   N  Y
Sbjct: 24  YYYPNNNNYNNNNGYTTYYYYPNNNNNGYYYNNNGYNNGY 63


>AF026204-3|AAB71253.1|  424|Caenorhabditis elegans Hypothetical
           protein C30E1.8 protein.
          Length = 424

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 255 RNGDRRSLSSSKKYCLFDHCRGNY 184
           R  +R+ +SSS  YCLF H + NY
Sbjct: 389 RKCERKEMSSS--YCLFIHYKNNY 410


>U58757-2|AAC47915.2|  402|Caenorhabditis elegans Hypothetical
           protein C01B10.3 protein.
          Length = 402

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 159 IYKMSNHFNNYLYNDQTDNTSYLNLNFSYLHSVTRFICN 275
           +Y   NH ++  Y D+  +T Y+N+   + HS+    C+
Sbjct: 94  LYLFKNH-SDIQYYDRFSSTGYINVRSGHQHSIGSNECD 131


>AF067947-7|AAK68397.2|  295|Caenorhabditis elegans Hypothetical
           protein T10B5.3 protein.
          Length = 295

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 146 IIHLNLQDVKPLQ*LPL 196
           IIH  L+D++P+Q LPL
Sbjct: 110 IIHATLRDLQPMQVLPL 126


>AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical
           protein T05B4.13 protein.
          Length = 156

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 70  DHAVNLKICNCYSFI-FINTLIKITCHHSPEFTRCQTTSIITST 198
           D A ++ IC       F+NT  + TC   P  T   ++S  +S+
Sbjct: 69  DCATDISICTTVGMQDFVNTYCQRTCGRCPSSTTASSSSTASSS 112


>AF016445-6|AAC69053.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.10 protein.
          Length = 250

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 82  NLKICNCYSF-IFINTLIKITCHHSPEFTRCQTTSIITST 198
           +L ICN      F+NT  + TC   P  T   + ++ + T
Sbjct: 169 DLSICNTVGMQTFVNTYCQRTCGRCPSTTASGSVTVTSGT 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,966,314
Number of Sequences: 27780
Number of extensions: 97507
Number of successful extensions: 193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)