Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1182X
         (333 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14180.1 68417.m02189 expressed protein ; expression supporte...    29   1.0  
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-...    28   1.4  
At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille prot...    26   7.2  
At3g16430.2 68416.m02088 jacalin lectin family protein similar t...    26   7.2  
At3g16430.1 68416.m02087 jacalin lectin family protein similar t...    26   7.2  
At3g51040.2 68416.m05589 expressed protein contains Pfam PF05608...    25   9.5  
At3g51040.1 68416.m05588 expressed protein contains Pfam PF05608...    25   9.5  
At1g66880.1 68414.m07601 serine/threonine protein kinase family ...    25   9.5  

>At4g14180.1 68417.m02189 expressed protein ; expression supported
           by MPSS
          Length = 1268

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 91  ICNCYSFIFINTLIKITCHHSPEFTRCQ 174
           + N Y    INT++ + C   P  T+CQ
Sbjct: 901 VSNSYLVSAINTVVDVACSKGPALTQCQ 928


>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
           factor-related similar to CCAAT-box-binding
           transcription factor (CCAAT-binding factor) (CBF)
           (Swiss-Prot:Q03701) [Homo sapiens], GB:P53569 [Mus
           musculus]
          Length = 1056

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 75  MVRVANKLNNPKNSNYHNVDYVTTN 1
           +V + NKL +P+N +  N DY  TN
Sbjct: 359 LVSLVNKLGDPQNKSASNADYHLTN 383


>At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille protein
           (ZWILLE) identical to SP|Q9XGW1 PINHEAD protein (ZWILLE
           protein) {Arabidopsis thaliana}; contains Pfam profiles
           PF02171: Piwi domain, PF02170: PAZ domain
          Length = 988

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 174 NHFNNYLYNDQT-DNTSYLNLNFSYLHSVTRFICNHIGEFIICN*LFYRPTPLV 332
           N  N  + N  T    + +N + S   +V R  CN +G+    + + + P P++
Sbjct: 540 NMMNKKMINGMTVSRWACVNFSRSVQENVARGFCNELGQMCEVSGMEFNPEPVI 593


>At3g16430.2 68416.m02088 jacalin lectin family protein similar to
           myrosinase binding protein [Brassica napus] GI:1711296;
           contains Pfam profile PF01419 jacalin-like lectin domain
          Length = 296

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 186 NYLYNDQTDNTSYLNLNFSYLHSVTRFICNHIGEFIICN*LFYRPTPLV 332
           +Y+ N QT+ T    +  S + +   F+ NH  E ++   ++Y+P  L+
Sbjct: 43  DYVKNGQTEQTPLRGIKGSTIPT-DPFVINHPEEHLVSIEIWYKPDGLI 90


>At3g16430.1 68416.m02087 jacalin lectin family protein similar to
           myrosinase binding protein [Brassica napus] GI:1711296;
           contains Pfam profile PF01419 jacalin-like lectin domain
          Length = 296

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 186 NYLYNDQTDNTSYLNLNFSYLHSVTRFICNHIGEFIICN*LFYRPTPLV 332
           +Y+ N QT+ T    +  S + +   F+ NH  E ++   ++Y+P  L+
Sbjct: 43  DYVKNGQTEQTPLRGIKGSTIPT-DPFVINHPEEHLVSIEIWYKPDGLI 90


>At3g51040.2 68416.m05589 expressed protein contains Pfam PF05608:
           Protein of unknown function (DUF778)
          Length = 231

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 73  HAVNLKICNCYSFIFIN 123
           H+ N+  CNC+SF+  N
Sbjct: 133 HSYNILTCNCHSFVANN 149


>At3g51040.1 68416.m05588 expressed protein contains Pfam PF05608:
           Protein of unknown function (DUF778)
          Length = 231

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 73  HAVNLKICNCYSFIFIN 123
           H+ N+  CNC+SF+  N
Sbjct: 133 HSYNILTCNCHSFVANN 149


>At1g66880.1 68414.m07601 serine/threonine protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 1296

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 168 MSNHFNNYLYNDQTDNT 218
           +S+HF N L+ DQT NT
Sbjct: 454 ISDHFYNVLHIDQTSNT 470


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,398,257
Number of Sequences: 28952
Number of extensions: 82191
Number of successful extensions: 201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)