Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1181X
         (428 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   6.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.6  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    20   8.7  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    20   8.7  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 206 VDFSFANKTAEFGDRN 159
           VDF F N +A F D N
Sbjct: 82  VDFLFDNFSAAFQDHN 97


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 206 VDFSFANKTAEFGDRN 159
           VDF F N +A F D N
Sbjct: 315 VDFLFDNFSAAFQDHN 330


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 206 VDFSFANKTAEFGDRN 159
           VDF F N +A F D N
Sbjct: 315 VDFLFDNFSAAFQDHN 330


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 306 CLYRNKHVPESAHVSRH 356
           CLY N  VP+   +  H
Sbjct: 13  CLYLNIWVPQRLRIRHH 29


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 304 DLKNLIIQGRPEEEINDS 251
           +LKN    G PEE++ D+
Sbjct: 17  NLKNAEFNGLPEEKLLDA 34


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,375
Number of Sequences: 336
Number of extensions: 1831
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)