Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1181X
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   101   5e-23
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   0.53 
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    26   2.9  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   3.8  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    24   8.7  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    24   8.7  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  101 bits (242), Expect = 5e-23
 Identities = 46/77 (59%), Positives = 61/77 (79%)
 Frame = +2

Query: 197 KNRQTREHLLVFFTNQRIRVIDFFLGPSLNDEVLKIMPVQKQTRAGERTRFKAFVAIGDN 376
           K +   E  L     +  +++D+FL P LNDEV+K++PVQKQTRAG+RTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 377 NGHIGLGVKCSKEVATA 427
           +GH+GLG+KC+KEVATA
Sbjct: 107 DGHVGLGIKCAKEVATA 123



 Score = 64.9 bits (151), Expect = 5e-12
 Identities = 26/39 (66%), Positives = 35/39 (89%)
 Frame = +3

Query: 138 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQ 66


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 135 RAHDHGRDHYRVHEDRHGLYLHRVIRNRRENRHVHRLEQRPP 10
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -3

Query: 129 HDHG--RDH--YRVHEDRHGLYLHRVIRNRRENRHVHRLEQRP 13
           H HG  R H  YR H  RH  +      ++R++R+  R E  P
Sbjct: 147 HRHGSHRRHEPYRTHLSRHHRHSTTNYHSKRDDRYERRREHSP 189


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 288 MRFLRSCLYRNKHVPESAHVSRH 356
           +++L S   R KH+PE   ++RH
Sbjct: 362 LKYLDSLRERYKHIPEIRRIARH 384


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 176 RPSCSRRKNRQTREHLLVFFTNQRIRVIDFFLGPSLNDE 292
           R    +++NR+T +  LV  T       +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 293 PHHSGTARGRNQ*LEFFDW*RKQVNALEFVDFSFANKTAEFGDRNPLF 150
           PHH    + R      +D+    V++LE V  + A +T E+ DRNPL+
Sbjct: 372 PHHRTGTKYRAY--PTYDFACPIVDSLEGV--THALRTTEYRDRNPLY 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,618,189
Number of Sequences: 5004
Number of extensions: 30826
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)