Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1181X
(428 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 97 5e-21
07_01_0756 + 5819367-5820038,5820847-5821005 93 1e-19
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 43 9e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 32 0.17
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 30 0.91
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 28 2.8
09_06_0325 + 22347286-22347574,22347770-22348054,22348508-223485... 27 4.9
06_01_0435 + 3092910-3093392,3093938-3094196,3094636-3094979 27 4.9
02_05_1168 + 34651143-34651424,34651983-34652138,34652239-346523... 27 4.9
01_01_0026 + 201042-201110,201252-201359,202511-202639,203164-20... 27 6.4
11_01_0395 + 2999855-2999920,3000605-3002191 27 8.5
08_01_0342 - 3016705-3016884,3016963-3017031,3017322-3017408,301... 27 8.5
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 97.1 bits (231), Expect = 5e-21
Identities = 43/53 (81%), Positives = 48/53 (90%)
Frame = +2
Query: 269 LGPSLNDEVLKIMPVQKQTRAGERTRFKAFVAIGDNNGHIGLGVKCSKEVATA 427
L P L DEV+KI PVQKQTRAG+RTRFKAFV +GDNNGH+GLGVKC+KEVATA
Sbjct: 81 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATA 133
Score = 60.1 bits (139), Expect = 7e-10
Identities = 23/39 (58%), Positives = 34/39 (87%)
Frame = +3
Query: 138 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQ 76
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 92.7 bits (220), Expect = 1e-19
Identities = 41/53 (77%), Positives = 47/53 (88%)
Frame = +2
Query: 269 LGPSLNDEVLKIMPVQKQTRAGERTRFKAFVAIGDNNGHIGLGVKCSKEVATA 427
L P L DEV+KI PVQKQTRAG+RTRFKAFV +GD +GH+GLGVKC+KEVATA
Sbjct: 84 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATA 136
Score = 60.1 bits (139), Expect = 7e-10
Identities = 24/39 (61%), Positives = 34/39 (87%)
Frame = +3
Query: 138 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQ 79
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 43.2 bits (97), Expect = 9e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +2
Query: 284 NDEVLKIMPVQKQTRAGERTRFKAFVAIGDNNGHIGLGVKCSKEVATA 427
++ V+++ V K + G + F+A V +GD GH+G+GV +KEV A
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEA 218
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 32.3 bits (70), Expect = 0.17
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 356 FVAIGDNNGHIGLGVKCSK 412
FV +GD + HI LGVKC+K
Sbjct: 2 FVVVGDGDSHIELGVKCAK 20
>04_04_0214 -
23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 29.9 bits (64), Expect = 0.91
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -3
Query: 396 PKPICPLLSPMATN--ALKRVRSPARVCFCTGMILRTSSFRDGPRKKSMTRIL*LVKKTS 223
P P+ P PM + AL +V + +++C IL TSS+ R + I+ L K+
Sbjct: 556 PVPVLPP-DPMQSGGQALLKVENISKMCNAVA-ILSTSSYHAAVRAGYIKNIVTLAKRVQ 613
Query: 222 KCS 214
KCS
Sbjct: 614 KCS 616
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 418 DFLAALHTQTNMPVVVANGNKCLETCALSGTCLFLYRHD 302
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>09_06_0325 +
22347286-22347574,22347770-22348054,22348508-22348592,
22348686-22348802,22349270-22349334,22349456-22349544,
22349642-22349721,22349797-22349908,22349990-22350109,
22350234-22350416
Length = 474
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 114 DHYRVHEDRHGLYLHRVIRNR 52
DHY ED +GL+++RV R R
Sbjct: 190 DHYGPAEDLYGLFINRVRRER 210
>06_01_0435 + 3092910-3093392,3093938-3094196,3094636-3094979
Length = 361
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 123 HGRDHYRVHEDRHGLYLH 70
H RDH R+ HG YLH
Sbjct: 5 HDRDHVRLRSRVHGTYLH 22
>02_05_1168 +
34651143-34651424,34651983-34652138,34652239-34652346,
34652778-34652888,34652985-34654421,34654598-34654852
Length = 782
Score = 27.5 bits (58), Expect = 4.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 419 RLPCCTSHPNQYARCCRQWQQMP 351
+LP C + PN Y C R ++ P
Sbjct: 717 KLPSCNNQPNSYLACLRAVKKQP 739
>01_01_0026 +
201042-201110,201252-201359,202511-202639,203164-203440,
203543-203647,203730-203875,204042-204149,204290-204378,
204552-205098
Length = 525
Score = 27.1 bits (57), Expect = 6.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 301 DHACTETNTCRRAHTFQGIC 360
D C++ NT RR++ F G+C
Sbjct: 216 DDECSDQNTQRRSNVFYGLC 235
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 242 QRIRVIDFFLGPSLNDEVLKIMPVQKQTRAGERT 343
++ +VIDF L L D + I+P+ R G++T
Sbjct: 243 EKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
>08_01_0342 -
3016705-3016884,3016963-3017031,3017322-3017408,
3017603-3017650,3017783-3017873,3018243-3018322,
3018429-3018533,3019457-3019551,3019710-3019788,
3020214-3020402
Length = 340
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 176 RPSCSRRKNRQTREHLLVFFTNQRIRVIDFFLGPS--LNDEVLKIMPV 313
+P CSR++NR R+ L + R +D G + + ++L + PV
Sbjct: 206 QPDCSRKQNRYQRQRLYTRIALGKARRMDVVWGETAGVEGQLLLLCPV 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,114,874
Number of Sequences: 37544
Number of extensions: 219991
Number of successful extensions: 643
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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