Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1181X
         (428 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              116   6e-27
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.2  
SB_52533| Best HMM Match : rve (HMM E-Value=2)                         29   1.6  
SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      29   2.2  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   29   2.2  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.9  
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)                  28   2.9  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     28   2.9  
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)                  28   3.8  
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   3.8  
SB_6385| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00099)        28   3.8  
SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)                27   6.6  
SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)                  27   8.7  
SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)               27   8.7  
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)                   27   8.7  
SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)                       27   8.7  
SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  116 bits (280), Expect = 6e-27
 Identities = 55/75 (73%), Positives = 64/75 (85%), Gaps = 1/75 (1%)
 Frame = +2

Query: 206 QTREHLLVF-FTNQRIRVIDFFLGPSLNDEVLKIMPVQKQTRAGERTRFKAFVAIGDNNG 382
           +T EH+ +F    +   +IDFFLG +L DEVLKIMPVQKQTRAG+RTRFKAFVAIGD+NG
Sbjct: 24  KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83

Query: 383 HIGLGVKCSKEVATA 427
           H+GLGVKCSKEVATA
Sbjct: 84  HVGLGVKCSKEVATA 98



 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = +3

Query: 156 WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
           WVPVTKLGRLV++ KI  LE IYLFSLPIKEFE
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFE 40


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 396  PKPICPLLSPMATNALKRVRSPARV 322
            P P+CP  S  ++N LKR R PARV
Sbjct: 1358 PSPLCPSSSSKSSNQLKRSR-PARV 1381


>SB_52533| Best HMM Match : rve (HMM E-Value=2)
          Length = 212

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 242 QRIRVIDFFLGPSLNDEVLKIMPVQKQTRAGERTRFKAFVAIGDNNGHIGLG 397
           QR+R     L    N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 81  QRLRSKANGLVERTNRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132


>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 426 AVATSLLHFTPKPICPLLSPMATNALKRVRSPARVC 319
           A   SL      P  P+LSP   + L RVRS  R C
Sbjct: 828 ATQESLTSIPTSPSSPILSPSPHSVLSRVRSGERKC 863


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 242 QRIRVIDFFLGPSLNDEVLKIMPVQKQTRAGERTRFKAFVAIGDNNGHIGLG 397
           QR+R     L    N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 141 QRLRGKANGLVERTNRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -3

Query: 129 HDHGRDHYRVHEDRHGLYLHRVIRNRRENRHVH 31
           H H R H+  H   H  + HR     R + H H
Sbjct: 312 HHHHRHHHHHHHHHHQRHRHRHRHRHRHHHHHH 344



 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 141 PCRAHDHGRDHYRVHEDRHGLYLHRVIRNRRENRHVH 31
           P R H H   H+  H   H  + H+  R+R  +RH H
Sbjct: 306 PYRYHHH---HHHRHHHHHHHHHHQRHRHRHRHRHRH 339


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 284 NDEVLKIMPVQKQTRAGERTRFKAFVAIGDNNGHIGLG 397
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 284  NDEVLKIMPVQKQTRAGERTRFKAFVAIGDNNGHIGLG 397
            N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045


>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
          Length = 212

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 284 NDEVLKIMPVQKQTRAGERTRFKAFVAIGDNNGHIGLG 397
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 9   NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 284 NDEVLKIMPVQKQTRAGERTRFKAFVAIGDNNGHIGLG 397
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569


>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
          Length = 280

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -2

Query: 421 GDFLAALHTQTNMPVVVANGNKCLETCALSGTCLFLYRHDL 299
           G  LA  +   N+  +V NG K  + C LS T L LY HDL
Sbjct: 111 GKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 332 GERTRFKAFVAIGDNNGHIGLGVKCSKEVA 421
           G + + K F+A+G  NGH+     C  ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385


>SB_6385| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00099)
          Length = 437

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +2

Query: 155 VGSCHQTRPSCSRRKNRQTREHLLVFFTNQRIRVIDFFLGPSLNDEVLKIMPVQKQTRAG 334
           +G+  +  P  S+RK ++  +   +  T +RI       GP   D+ +  +  +K+TRAG
Sbjct: 14  LGAHGEVGPCASKRKRKKVSKE--IDCTGKRISTT---FGPIEPDKRMATVASKKKTRAG 68

Query: 335 ERTRFKAFVAIG 370
            R     F+A G
Sbjct: 69  HRAFVTRFMAEG 80


>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
          Length = 641

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 111 HYRVHEDRHGLYLHRVIRNRRENRHVHRLEQRPPL 7
           HYR H+ +   + HR    +++N+H HR    P L
Sbjct: 601 HYRHHQKQQNQHHHR--HRKQQNQHHHRHGHNPLL 633


>SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)
          Length = 1063

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = +2

Query: 239 NQRIRVIDFFLGPSLNDEVLKIMPVQKQTRAGERTRFK 352
           +Q  ++IDFF+ P + +E++ ++  + +    E+ R+K
Sbjct: 19  SQNRKLIDFFVRPEILEELVNLIIKEPEEDFDEKLRYK 56


>SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)
          Length = 145

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = -2

Query: 418 DFLAALHTQTNMPVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQGRPEEEINDSNSLI 239
           D +AA   ++N P  + + +   +T     +   L+ H+++ +I +  PE    + + LI
Sbjct: 11  DMMAA-GERSNSPTSIDSTDSGKKTKKRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLI 69

Query: 238 GKE 230
           G+E
Sbjct: 70  GEE 72


>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
          Length = 382

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -3

Query: 180 GRVW*QEPTLSGLPCRAHDHGRDHYRVHEDRHGLYLH 70
           G +W +   L  LP     H  DH R H  RH   +H
Sbjct: 103 GFLWQKNGVLLSLPPPQFRHSHDHDRHHYHRHHNNIH 139


>SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)
          Length = 174

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 151 KSGFLSPNSAVLFAKEKSTNSRAFTCFLYQSKNSSH*FLPR 273
           KSG L     ++F  E   +S+AF C LY     S   LP+
Sbjct: 56  KSGRLGGMPNIVFNSEYQWSSKAFLCTLYNKNGYSLAKLPQ 96


>SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1379

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -2

Query: 418 DFLAALHTQTNMPVVVANG-NKCLETCALSGTCLFLYRHDLKNLIIQGRPEEEINDSNSL 242
           D L A H   NMPVVV +G   C +T  +S        H   N   + RP   +   +S 
Sbjct: 444 DQLRAAHLIANMPVVVLSGKGGCGKTYVVSKVLSEANSHISPNSNQEDRPAMNLTPPSST 503

Query: 241 I 239
           I
Sbjct: 504 I 504


>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = -2

Query: 418  DFLAALHTQTNMPVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQGRPEEEINDSNSLI 239
            D +AA   ++N P  + + +   +T     +   L+ H+++ +I +  PE    + + LI
Sbjct: 1244 DMMAA-GERSNSPTSIDSTDSGKKTKKRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLI 1302

Query: 238  GKE 230
            G+E
Sbjct: 1303 GEE 1305


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,785,303
Number of Sequences: 59808
Number of extensions: 253298
Number of successful extensions: 827
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)