Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1181X
         (428 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   116   1e-26
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   116   1e-26
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   116   1e-26
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   116   1e-26
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   116   1e-26
BT029103-1|ABJ17036.1|  823|Drosophila melanogaster IP14290p pro...    29   3.5  
AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA...    29   3.5  
AE013599-325|AAF59274.2| 1307|Drosophila melanogaster CG11101-PA...    28   6.1  

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  116 bits (280), Expect = 1e-26
 Identities = 57/77 (74%), Positives = 61/77 (79%)
 Frame = +2

Query: 197 KNRQTREHLLVFFTNQRIRVIDFFLGPSLNDEVLKIMPVQKQTRAGERTRFKAFVAIGDN 376
           K +   E  L     +   +IDFFLG SL DEVLKIMPVQKQTRAG+RTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 377 NGHIGLGVKCSKEVATA 427
           NGHIGLGVKCSKEVATA
Sbjct: 117 NGHIGLGVKCSKEVATA 133



 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 34/39 (87%), Positives = 35/39 (89%)
 Frame = +3

Query: 138 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFE
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFE 75


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  116 bits (280), Expect = 1e-26
 Identities = 57/77 (74%), Positives = 61/77 (79%)
 Frame = +2

Query: 197 KNRQTREHLLVFFTNQRIRVIDFFLGPSLNDEVLKIMPVQKQTRAGERTRFKAFVAIGDN 376
           K +   E  L     +   +IDFFLG SL DEVLKIMPVQKQTRAG+RTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 377 NGHIGLGVKCSKEVATA 427
           NGHIGLGVKCSKEVATA
Sbjct: 117 NGHIGLGVKCSKEVATA 133



 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 34/39 (87%), Positives = 35/39 (89%)
 Frame = +3

Query: 138 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFE
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFE 75


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  116 bits (280), Expect = 1e-26
 Identities = 57/77 (74%), Positives = 61/77 (79%)
 Frame = +2

Query: 197 KNRQTREHLLVFFTNQRIRVIDFFLGPSLNDEVLKIMPVQKQTRAGERTRFKAFVAIGDN 376
           K +   E  L     +   +IDFFLG SL DEVLKIMPVQKQTRAG+RTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 377 NGHIGLGVKCSKEVATA 427
           NGHIGLGVKCSKEVATA
Sbjct: 117 NGHIGLGVKCSKEVATA 133



 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 34/39 (87%), Positives = 35/39 (89%)
 Frame = +3

Query: 138 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFE
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFE 75


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  116 bits (280), Expect = 1e-26
 Identities = 57/77 (74%), Positives = 61/77 (79%)
 Frame = +2

Query: 197 KNRQTREHLLVFFTNQRIRVIDFFLGPSLNDEVLKIMPVQKQTRAGERTRFKAFVAIGDN 376
           K +   E  L     +   +IDFFLG SL DEVLKIMPVQKQTRAG+RTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 377 NGHIGLGVKCSKEVATA 427
           NGHIGLGVKCSKEVATA
Sbjct: 117 NGHIGLGVKCSKEVATA 133



 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 34/39 (87%), Positives = 35/39 (89%)
 Frame = +3

Query: 138 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFE
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFE 75


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  116 bits (280), Expect = 1e-26
 Identities = 57/77 (74%), Positives = 61/77 (79%)
 Frame = +2

Query: 197 KNRQTREHLLVFFTNQRIRVIDFFLGPSLNDEVLKIMPVQKQTRAGERTRFKAFVAIGDN 376
           K +   E  L     +   +IDFFLG SL DEVLKIMPVQKQTRAG+RTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 377 NGHIGLGVKCSKEVATA 427
           NGHIGLGVKCSKEVATA
Sbjct: 117 NGHIGLGVKCSKEVATA 133



 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 34/39 (87%), Positives = 35/39 (89%)
 Frame = +3

Query: 138 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFE
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFE 75


>BT029103-1|ABJ17036.1|  823|Drosophila melanogaster IP14290p
           protein.
          Length = 823

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 144 LPCRAHDHGRDHYRVHEDRHGLYLHRVIRNRREN-RHVHRLEQRPPLLN 1
           L C  H    D  R+H  + GL +  V+   REN   VH + ++  LLN
Sbjct: 359 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 407


>AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA
           protein.
          Length = 1958

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 144 LPCRAHDHGRDHYRVHEDRHGLYLHRVIRNRREN-RHVHRLEQRPPLLN 1
           L C  H    D  R+H  + GL +  V+   REN   VH + ++  LLN
Sbjct: 325 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 373


>AE013599-325|AAF59274.2| 1307|Drosophila melanogaster CG11101-PA
           protein.
          Length = 1307

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 155 VGSCHQTRPSCSRRKNRQTREHLLVFFTNQRI 250
           V SCH  RP  SRRK+R+    ++ F    R+
Sbjct: 816 VSSCH-CRPGYSRRKHREPCRRVISFHLGMRV 846


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,373,024
Number of Sequences: 53049
Number of extensions: 376185
Number of successful extensions: 2481
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1934
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1334434944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)