Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1181X
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    91   3e-19
U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop heli...    31   0.27 
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U80437-18|AAB37629.1|  518|Caenorhabditis elegans Cell division ...    29   1.9  
Z81094-6|CAB03154.1|  666|Caenorhabditis elegans Hypothetical pr...    27   4.3  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p...    27   7.5  
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p...    27   7.5  
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p...    27   7.5  
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr...    27   7.5  
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.     27   7.5  
U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF098993-9|AAC67463.3|  469|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z82282-10|CAB05277.2|  600|Caenorhabditis elegans Hypothetical p...    26   10.0 
Z82282-8|CAB05278.1|  575|Caenorhabditis elegans Hypothetical pr...    26   10.0 

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 91.1 bits (216), Expect = 3e-19
 Identities = 45/62 (72%), Positives = 51/62 (82%)
 Frame = +2

Query: 242 QRIRVIDFFLGPSLNDEVLKIMPVQKQTRAGERTRFKAFVAIGDNNGHIGLGVKCSKEVA 421
           +   +ID  L  +L DEVLKI PVQKQT AG+RTRFKAFVAIGD+ GH+GLGVKCSKEVA
Sbjct: 86  KEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVA 144

Query: 422 TA 427
           TA
Sbjct: 145 TA 146



 Score = 59.7 bits (138), Expect = 9e-10
 Identities = 28/38 (73%), Positives = 30/38 (78%)
 Frame = +3

Query: 141 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
           E + EW PVTKLGRLV+E KI  LE IYL SLPIKEFE
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFE 89


>U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop helix
           protein 15 protein.
          Length = 89

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 191 RRKNRQTREHLLVFFTNQRIRVIDFFLGPSLNDEVLKIMPVQKQTRAGERTRFK-AFVAI 367
           R++ R T ++  +  T +RIRV  F +  S    +L  +PV+K+    E  RF  A+++ 
Sbjct: 24  RKRRRATPKYRNLHATRERIRVESFNMAFSQLRALLPTLPVEKKLSKIEILRFSIAYISF 83

Query: 368 GDN 376
            DN
Sbjct: 84  LDN 86


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 361 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 275
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 361 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 275
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>U80437-18|AAB37629.1|  518|Caenorhabditis elegans Cell division
           cycle related protein6 protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -2

Query: 397 TQTNMPVVVANGNK---CLETCALSGTCLFLYRHDLKNLIIQGRPEEEI 260
           T T M V+ + G     C+  CA + T   L++   ++L + G+P EEI
Sbjct: 209 TATTMRVLKSLGKSVRSCIVNCASTNTKSALFKTIFESLDLDGKPNEEI 257


>Z81094-6|CAB03154.1|  666|Caenorhabditis elegans Hypothetical
           protein F58G11.3a protein.
          Length = 666

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 396 PKPICPLLSPMATNALKRVRSPARVCFC 313
           PKP   LL PM+  A  ++R  +RV  C
Sbjct: 617 PKPFTVLLPPMSKGAGVKIRPRSRVVLC 644


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 222 YLFSLPIKEFESLISSSGRP*MMRFLRSCLYRNKHVPESAHVSR 353
           Y+++L  K+ E+ +   GR     ++    YR+K VP    V R
Sbjct: 46  YIYALTTKKNENHLQRRGRSLTRVYVEQKFYRSKSVPSPDQVQR 89


>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
            protein ZK617.1c protein.
          Length = 6629

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -3

Query: 129  HDHGRDHYRVHED-RHGLY--LHRVIRNRRENRHVHRLEQRP 13
            HDH  DHY +HE+   G +  +HRV      N    +    P
Sbjct: 5725 HDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP 5766


>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
            protein ZK617.1b protein.
          Length = 7158

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -3

Query: 129  HDHGRDHYRVHED-RHGLY--LHRVIRNRRENRHVHRLEQRP 13
            HDH  DHY +HE+   G +  +HRV      N    +    P
Sbjct: 6254 HDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP 6295


>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
            protein ZK617.1a protein.
          Length = 6839

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -3

Query: 129  HDHGRDHYRVHED-RHGLY--LHRVIRNRRENRHVHRLEQRP 13
            HDH  DHY +HE+   G +  +HRV      N    +    P
Sbjct: 5935 HDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP 5976


>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
            ZK617.1c protein.
          Length = 6629

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -3

Query: 129  HDHGRDHYRVHED-RHGLY--LHRVIRNRRENRHVHRLEQRP 13
            HDH  DHY +HE+   G +  +HRV      N    +    P
Sbjct: 5725 HDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP 5766


>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
            ZK617.1b protein.
          Length = 7158

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -3

Query: 129  HDHGRDHYRVHED-RHGLY--LHRVIRNRRENRHVHRLEQRP 13
            HDH  DHY +HE+   G +  +HRV      N    +    P
Sbjct: 6254 HDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP 6295


>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
            ZK617.1a protein.
          Length = 6839

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -3

Query: 129  HDHGRDHYRVHED-RHGLY--LHRVIRNRRENRHVHRLEQRP 13
            HDH  DHY +HE+   G +  +HRV      N    +    P
Sbjct: 5935 HDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP 5976


>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
          Length = 6048

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -3

Query: 129  HDHGRDHYRVHED-RHGLY--LHRVIRNRRENRHVHRLEQRP 13
            HDH  DHY +HE+   G +  +HRV      N    +    P
Sbjct: 5144 HDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP 5185


>U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical
           protein R04E5.8b protein.
          Length = 142

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 141 PCRAHDHGRDHYRVHEDRHG-LYLHRVIRNRRENRHVHR 28
           P RAH+ G+ H R H   HG    H   RNR  N   +R
Sbjct: 60  PARAHNRGQHHNRGH--HHGPPRNHNQDRNRHRNHDGNR 96


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 141  PCRAHDHGRDHYRVHEDRHG-LYLHRVIRNRRENRHVHR 28
            P RAH+ G+ H R H   HG    H   RNR  N   +R
Sbjct: 904  PARAHNRGQHHNRGH--HHGPPRNHNQDRNRHRNHDGNR 940


>AF098993-9|AAC67463.3|  469|Caenorhabditis elegans Hypothetical
           protein T10B11.8 protein.
          Length = 469

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -3

Query: 117 RDHYRVHEDRHGLYL-HR 67
           RDHY +H ++HGL + HR
Sbjct: 149 RDHYDIHLNKHGLIIAHR 166


>Z82282-10|CAB05277.2|  600|Caenorhabditis elegans Hypothetical
           protein T07G12.6 protein.
          Length = 600

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 399 TPKPICPLLSPMATNALKRVRSPA 328
           T +P+ PL + +ATN L R  +PA
Sbjct: 64  TIEPVVPLSTTLATNKLPRFSTPA 87


>Z82282-8|CAB05278.1|  575|Caenorhabditis elegans Hypothetical
           protein T07G12.11 protein.
          Length = 575

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 399 TPKPICPLLSPMATNALKRVRSPA 328
           T +P+ PL + +ATN L R  +PA
Sbjct: 63  TIEPVVPLSTTLATNKLPRFSTPA 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,245,834
Number of Sequences: 27780
Number of extensions: 184696
Number of successful extensions: 599
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)