Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1181X
(428 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 107 2e-24
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 107 4e-24
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 106 7e-24
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 106 7e-24
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 106 7e-24
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 106 7e-24
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 42 2e-04
At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident... 29 1.0
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 1.3
At3g63100.1 68416.m07087 glycine-rich protein 29 1.8
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 2.3
At3g01450.1 68416.m00069 expressed protein 28 2.3
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 27 5.4
At3g42820.1 68416.m04484 hypothetical protein hypothetical prote... 27 7.1
At5g47260.1 68418.m05827 disease resistance protein (CC-NBS-LRR ... 26 9.4
At2g30100.1 68415.m03663 ubiquitin family protein low similarity... 26 9.4
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 107 bits (258), Expect = 2e-24
Identities = 46/59 (77%), Positives = 55/59 (93%)
Frame = +2
Query: 251 RVIDFFLGPSLNDEVLKIMPVQKQTRAGERTRFKAFVAIGDNNGHIGLGVKCSKEVATA 427
++ID +GPSL DEV+KIMPVQKQTRAG+RTRFKAF+ +GD+NGH+GLGVKCSKEVATA
Sbjct: 77 QIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATA 135
Score = 62.5 bits (145), Expect = 1e-10
Identities = 25/37 (67%), Positives = 34/37 (91%)
Frame = +3
Query: 144 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQ 77
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 107 bits (256), Expect = 4e-24
Identities = 46/59 (77%), Positives = 54/59 (91%)
Frame = +2
Query: 251 RVIDFFLGPSLNDEVLKIMPVQKQTRAGERTRFKAFVAIGDNNGHIGLGVKCSKEVATA 427
++ID +GP+L DEV+KIMPVQKQTRAG+RTRFKAFV +GD NGH+GLGVKCSKEVATA
Sbjct: 86 QIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATA 144
Score = 54.8 bits (126), Expect = 2e-08
Identities = 22/37 (59%), Positives = 31/37 (83%)
Frame = +3
Query: 144 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
++++WVPVTKLGRLV G I ++E IYL SLP+KE++
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQ 86
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 106 bits (254), Expect = 7e-24
Identities = 46/59 (77%), Positives = 54/59 (91%)
Frame = +2
Query: 251 RVIDFFLGPSLNDEVLKIMPVQKQTRAGERTRFKAFVAIGDNNGHIGLGVKCSKEVATA 427
++ID +GP+L DEV+KIMPVQKQTRAG+RTRFKAFV +GD NGH+GLGVKCSKEVATA
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATA 143
Score = 57.6 bits (133), Expect = 3e-09
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +3
Query: 144 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ 85
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 106 bits (254), Expect = 7e-24
Identities = 46/59 (77%), Positives = 54/59 (91%)
Frame = +2
Query: 251 RVIDFFLGPSLNDEVLKIMPVQKQTRAGERTRFKAFVAIGDNNGHIGLGVKCSKEVATA 427
++ID +GP+L DEV+KIMPVQKQTRAG+RTRFKAFV +GD NGH+GLGVKCSKEVATA
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATA 143
Score = 57.6 bits (133), Expect = 3e-09
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +3
Query: 144 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ 85
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 106 bits (254), Expect = 7e-24
Identities = 46/59 (77%), Positives = 54/59 (91%)
Frame = +2
Query: 251 RVIDFFLGPSLNDEVLKIMPVQKQTRAGERTRFKAFVAIGDNNGHIGLGVKCSKEVATA 427
++ID +GP+L DEV+KIMPVQKQTRAG+RTRFKAFV +GD NGH+GLGVKCSKEVATA
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATA 143
Score = 57.6 bits (133), Expect = 3e-09
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +3
Query: 144 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ 85
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 106 bits (254), Expect = 7e-24
Identities = 46/59 (77%), Positives = 54/59 (91%)
Frame = +2
Query: 251 RVIDFFLGPSLNDEVLKIMPVQKQTRAGERTRFKAFVAIGDNNGHIGLGVKCSKEVATA 427
++ID +GP+L DEV+KIMPVQKQTRAG+RTRFKAFV +GD NGH+GLGVKCSKEVATA
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATA 143
Score = 57.6 bits (133), Expect = 3e-09
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +3
Query: 144 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ 85
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 41.5 bits (93), Expect = 2e-04
Identities = 16/47 (34%), Positives = 30/47 (63%)
Frame = +2
Query: 287 DEVLKIMPVQKQTRAGERTRFKAFVAIGDNNGHIGLGVKCSKEVATA 427
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAA 195
>At1g50030.1 68414.m05614 target of rapamycin protein (TOR) identical
to pTOR [Arabidopsis thaliana] GI:12002902; contains Pfam
profiles PF00454 Phosphatidylinositol 3- and 4-kinase,
PF02259 FAT domain, PF02260 FATC domain
Length = 2481
Score = 29.5 bits (63), Expect = 1.0
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = -3
Query: 264 KSMTRIL*LVKKTSKCSRVCRFFLREQDGRV-W*QEPTLSGLPCRAHDHGRDHYRVHEDR 88
K++TR++ V+ T S + DG+ ++ + L C AH G D E
Sbjct: 1064 KTLTRVIPCVQVTGHISALVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIESI 1123
Query: 87 HGLYLHRVIRNRRENRHVH-RLEQRPPLL 4
H L L +R+ +E +H R +R PL+
Sbjct: 1124 HKLLLKHRLRH-KEFEEIHARWRRREPLI 1151
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 426 AVATSLLHFTPKPICPLLSPMATNALKRVRSPARVCFCTGMILRTSSFR 280
A+ H +P + P L P N R+R+ A CF +G + R + R
Sbjct: 188 ALVAMTTHVSPALLLPKLRPCLKNKSPRIRAKASACF-SGCVPRLEAAR 235
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -3
Query: 135 RAHDHGRDHYRVHEDRHGLYLHRVIRNRRENRHVH 31
R H HGRD R H HG + HR R R H H
Sbjct: 111 RDHRHGRD--RGHHRGHGHHHHRGHRRGRGRGHGH 143
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 129 HDHGRDHYRVHEDRHGLYLHRVIRNRRENRH 37
HD G H R H HG + HR R+ R++RH
Sbjct: 88 HDRGHGHGRGHGHGHG-HGHR--RHGRDHRH 115
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 353 AFVAIGDNNGHIGLGVKCSKE 415
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 426 AVATSLLHFTPKPICPLLSPMATNALKRVRSPARVCF 316
A+ H +P + P L P N R+R+ A CF
Sbjct: 188 ALVAMTAHVSPALLLPKLQPFLKNRNPRIRAKASTCF 224
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 316 LYRHDLKNLIIQGRPEEEINDS 251
L R L+ L+ QGRP+EEIN +
Sbjct: 194 LGRDKLEQLLKQGRPKEEINSN 215
>At3g42820.1 68416.m04484 hypothetical protein hypothetical proteins
- Arabidopsis thaliana
Length = 906
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/47 (25%), Positives = 20/47 (42%)
Frame = -2
Query: 364 GNKCLETCALSGTCLFLYRHDLKNLIIQGRPEEEINDSNSLIGKENK 224
G + C LS Y++D K ++ G P I N+ + E +
Sbjct: 698 GRRSKRLCTLSNKLDRRYQYDKKTKVLVGHPSPGIKQLNAYVDPEER 744
>At5g47260.1 68418.m05827 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 885
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 162 PVTKLGRLVREGKIDKLESIYLFSLPIKEFESLI 263
P L +LV +G + KLESIY LP E L+
Sbjct: 777 PFQNLTKLVLDG-LPKLESIYWTPLPFPVLEYLV 809
>At2g30100.1 68415.m03663 ubiquitin family protein low similarity to
SP|Q9UQ13 Leucine-rich repeat protein SHOC-2
(Ras-binding protein Sur-8) {Homo sapiens}; contains
Pfam profiles PF00240: Ubiquitin family, PF01535: PPR
repeat, PF00560: Leucine Rich Repeat
Length = 897
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -2
Query: 391 TNMPVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQGRPE 269
T + ++ AN N+ G C FL DL II PE
Sbjct: 771 TQLEILKANNNRITSLPESIGNCSFLMEVDLSANIISELPE 811
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,716,278
Number of Sequences: 28952
Number of extensions: 172454
Number of successful extensions: 555
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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