Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1180
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    30   0.40 
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    30   0.40 
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    29   0.91 
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    27   2.1  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   8.5  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 532 FI*ILSFTCNMYVYLLVVGPLVSPRGWVPS 621
           F+ +L    N+ ++LLV+ PL  PR W P+
Sbjct: 153 FLLLLPLAYNITLFLLVIIPLFFPRAWSPT 182


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = -3

Query: 377 IENITSKLLSKTFQNISHSPNSFDKKLHFFYAFIFPTMTFGTYFNSKKVYGVIYV 213
           ++ I   +LS+T + IS  P    + +++++ F   T T G Y+  K+V   +Y+
Sbjct: 687 MQGIIKSMLSRTLELIS--PEELQRLIYYYFEFF--TTTGGEYYLKKEVQHSLYI 737


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 674 PHPSNRNALLLHGANRQGDGTHP 606
           PHP N   +LL G+N Q D + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 674 PHPSNRNALLLHGANRQGDGTHP 606
           PHP N   ++L G+N Q D   P
Sbjct: 97  PHPDNSKIVILMGSNFQNDANSP 119


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 59  ENFTLRILVGNQTGRSWKVVDLIRQF 136
           +N   R+ +G    R+W+ +  IR+F
Sbjct: 49  KNVLYRLTIGTNPDRNWEAIAFIREF 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,084,672
Number of Sequences: 5004
Number of extensions: 67082
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)