Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1180
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0305 - 2181727-2184793,2185635-2185945                           32   0.55 
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    28   6.7  

>07_01_0305 - 2181727-2184793,2185635-2185945
          Length = 1125

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -1

Query: 238  KKSMVLFTFRVCKNTSAAKSTPSVQQTNIHRD--KLKLTNEVNDLPRAPGLITHENTQGE 65
            K   ++++FR  K+ S  +  PS++   +H D    K+   + D P  P L  H N QG+
Sbjct: 1007 KLEKIVWSFREMKSISGIERLPSLRSFELHGDCNPDKVEIALKDHPNHPDLEHHGNRQGQ 1066


>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
            23812210-23812285,23813064-23813072,23813243-23813335,
            23813578-23813581,23813780-23814703,23814926-23815909,
            23816073-23816118,23816376-23816951,23817253-23817798,
            23817820-23818416
          Length = 2252

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 177  VDFAAEVFLHTRNVNNTIDFFTIEVSTESH-CGKYKRIKKM 296
            +D  + V L   ++NN +D F +   TES  C  Y+  +++
Sbjct: 1642 LDLESSVKLQNSDLNNVVDLFQLSYLTESEKCNLYRNCQEL 1682


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,602,260
Number of Sequences: 37544
Number of extensions: 379121
Number of successful extensions: 831
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)