Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1180
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37120| Best HMM Match : EB (HMM E-Value=4.2)                        29   3.9  
SB_58259| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_57972| Best HMM Match : Phage_integrase (HMM E-Value=0.85)          28   6.9  
SB_13852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_37120| Best HMM Match : EB (HMM E-Value=4.2)
          Length = 376

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -1

Query: 703 VLRSHSYNGCPTLQTETHYCFTEQIGRAMVPTHADSQEVLPPVNTHT 563
           + ++H+Y G PT +T+ H        +    T+ +S      V+T+T
Sbjct: 27  ITKAHTYTGSPTSKTKAHTYTESPTSKTKAHTYTESPTSKTVVHTYT 73


>SB_58259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 688 SYNGCPTLQTETHYCFTEQIGRAMVPTHADSQEVLPPVNTHT 563
           S  GCPT+ + T      +      PT ++   +LP  N+HT
Sbjct: 127 SPQGCPTVPSTTQTPLPPKTNPTTEPTESNEVPLLPTENSHT 168


>SB_57972| Best HMM Match : Phage_integrase (HMM E-Value=0.85)
          Length = 264

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 166 QQTNIHRDKLKLTNEVNDLPRAPGLITHENTQGEIFLFFLRFLSSKTL 23
           +  +++RDKL L++EV  L   P  I+H   +    LFF R +   TL
Sbjct: 88  ENVSLNRDKLLLSDEVTSLRARPFEISHSYEED---LFFSREIEVTTL 132


>SB_13852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 846

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 211 RVCKNTSAAKSTPSVQQTNIHRDKLKLTNEVNDL 110
           + CKN    K+    +      D LKLT +V DL
Sbjct: 393 KTCKNIEELKNKMETRYRKCKEDNLKLTGDVKDL 426


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,173,472
Number of Sequences: 59808
Number of extensions: 463068
Number of successful extensions: 1070
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)