Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1180
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10401-10|AAA19062.2|  476|Caenorhabditis elegans Hypothetical p...    31   1.1  
AF016427-4|AAB65353.1|  774|Caenorhabditis elegans Hypothetical ...    31   1.1  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z50755-4|CAA90634.1|  369|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase...    28   7.9  
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase...    28   7.9  
AF068714-7|AAT68905.1|  592|Caenorhabditis elegans Egg laying de...    28   7.9  
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de...    28   7.9  
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de...    28   7.9  

>U10401-10|AAA19062.2|  476|Caenorhabditis elegans Hypothetical
           protein T20B12.9 protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -3

Query: 392 PKNINIENIT----SKLLSKTFQNISHSPNSFDKKLHFFYAF 279
           P N N+ +IT    SKL++  F +I H   +++KK  F + F
Sbjct: 383 PPNTNLNSITNSDNSKLVANNFTSIEHETYAYEKKRGFSHCF 424


>AF016427-4|AAB65353.1|  774|Caenorhabditis elegans Hypothetical
           protein F32D1.3 protein.
          Length = 774

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 383 INIENITSKLLSKTFQNISHSPNSFDKKLHFFYAFIF 273
           ++I N  S   SK    I+H PNS  + L F Y  +F
Sbjct: 240 LSINNFQSPKFSKNDNPIAHEPNSLTRALTFMYLPVF 276


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -1

Query: 199 NTSAAKSTPSVQQTNIHRDKLKLTNEVNDLPRAPGLITHENTQGEIFLFFLRFLSSKTLA 20
           +++AAK +   +        LKLTN+  + P+ P   T E T G++    LR  +  T  
Sbjct: 595 SSTAAKRSKRAESDEEEEQDLKLTNKSPEKPKKPSKTT-EETVGDVLKKRLRDTAKTTAT 653

Query: 19  V 17
           V
Sbjct: 654 V 654


>Z50755-4|CAA90634.1|  369|Caenorhabditis elegans Hypothetical
           protein R12H7.4 protein.
          Length = 369

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -3

Query: 326 HSPNSFDKKLHFFYAFIFPTM-----TFGTYFNSKKVYGVIYVSC 207
           H  +  +  + +   +IFP +     T  TYF  KK YG  Y+ C
Sbjct: 101 HGKSDKNGSIPWILYYIFPIVLAIGPTLATYFPEKKYYGTAYLHC 145


>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
           beta protein.
          Length = 1418

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 183 FAAEVFLHTRNVNNTIDFFTIEVSTESHCGKYKRIKKMKFFVKTVGGM 326
           F  +V +  R+       F + +S E+HC K  ++K  K+ +   G M
Sbjct: 410 FFKDVLVQIRDTAFARSDFPVVLSFENHCSKSNQLKMAKYCMDIFGDM 457


>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
           beta homolog EGL-8 protein.
          Length = 1431

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 183 FAAEVFLHTRNVNNTIDFFTIEVSTESHCGKYKRIKKMKFFVKTVGGM 326
           F  +V +  R+       F + +S E+HC K  ++K  K+ +   G M
Sbjct: 412 FFKDVLVQIRDTAFARSDFPVVLSFENHCSKSNQLKMAKYCMDIFGDM 459


>AF068714-7|AAT68905.1|  592|Caenorhabditis elegans Egg laying
           defective protein 8,isoform c protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 183 FAAEVFLHTRNVNNTIDFFTIEVSTESHCGKYKRIKKMKFFVKTVGGM 326
           F  +V +  R+       F + +S E+HC K  ++K  K+ +   G M
Sbjct: 412 FFKDVLVQIRDTAFARSDFPVVLSFENHCSKSNQLKMAKYCMDIFGDM 459


>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
           defective protein 8,isoform a protein.
          Length = 1419

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 183 FAAEVFLHTRNVNNTIDFFTIEVSTESHCGKYKRIKKMKFFVKTVGGM 326
           F  +V +  R+       F + +S E+HC K  ++K  K+ +   G M
Sbjct: 412 FFKDVLVQIRDTAFARSDFPVVLSFENHCSKSNQLKMAKYCMDIFGDM 459


>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
           defective protein 8,isoform b protein.
          Length = 1431

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 183 FAAEVFLHTRNVNNTIDFFTIEVSTESHCGKYKRIKKMKFFVKTVGGM 326
           F  +V +  R+       F + +S E+HC K  ++K  K+ +   G M
Sbjct: 412 FFKDVLVQIRDTAFARSDFPVVLSFENHCSKSNQLKMAKYCMDIFGDM 459


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,011,723
Number of Sequences: 27780
Number of extensions: 372913
Number of successful extensions: 913
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)