Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1180
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22410.1 68416.m02827 expressed protein                             30   1.8  
At5g14480.1 68418.m01694 glycosyl transferase family 17 protein ...    29   4.3  
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    28   5.6  
At5g15620.1 68418.m01828 F-box family protein contains F-box dom...    28   5.6  
At5g58370.2 68418.m07309 expressed protein                             27   9.8  
At5g58370.1 68418.m07308 expressed protein                             27   9.8  
At3g47010.1 68416.m05105 glycosyl hydrolase family 3 protein bet...    27   9.8  
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ...    27   9.8  

>At3g22410.1 68416.m02827 expressed protein
          Length = 400

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 424 NFQKTKASLPNLKTSTLKILHQNFYQKLFKTFHIPP 317
           +F ++ ++  NL  +TLKI+  N+  +L+K F I P
Sbjct: 141 SFFRSSSAFANLLLATLKIIADNYPCRLYKAFIIDP 176


>At5g14480.1 68418.m01694 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 387

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 350 SKTFQNISHSPNSFDKKLHFFYAFIFPTMTFGTYFNSKKV 231
           +K F  +      FD K + F+  I P   FG Y + +K+
Sbjct: 27  AKAFSRVRCVLRGFDFKTYIFFFTIVPIFIFGVYLHGQKL 66


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 704 SSKIS*LQRLPHPSNR-NALLLHGANRQGDGTH 609
           S  +S L  +PHP NR NALL+  + R+   TH
Sbjct: 138 SEFLSLLDEIPHPPNRDNALLVLNSLREWQKTH 170


>At5g15620.1 68418.m01828 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 440

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = -1

Query: 397 PNLKTSTLK-ILHQNFYQKL 341
           PNLKT T++  LH NFY+KL
Sbjct: 334 PNLKTLTIEGPLHYNFYEKL 353


>At5g58370.2 68418.m07309 expressed protein
          Length = 465

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -1

Query: 217 TFRVCKNTSAAKST-PSVQQTNIHRDKLKLTNEVNDLPRAPGLITHENTQGEIFLF 53
           T R   +T++ K+T  S+++  ++ +K K  N VN++PR   + +  N QG    F
Sbjct: 34  TQRSDDDTNSRKTTVSSMKKKRVYPNKAKHNNHVNEIPRTMWVASKRN-QGSTSSF 88


>At5g58370.1 68418.m07308 expressed protein
          Length = 446

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -1

Query: 217 TFRVCKNTSAAKST-PSVQQTNIHRDKLKLTNEVNDLPRAPGLITHENTQGEIFLF 53
           T R   +T++ K+T  S+++  ++ +K K  N VN++PR   + +  N QG    F
Sbjct: 34  TQRSDDDTNSRKTTVSSMKKKRVYPNKAKHNNHVNEIPRTMWVASKRN-QGSTSSF 88


>At3g47010.1 68416.m05105 glycosyl hydrolase family 3 protein
           beta-D-glucan exohydrolase, Nicotiana tabacum,
           TREMBL:AB017502_1
          Length = 581

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 674 PHPSNRNALLLHGANRQGDGTHPRGLTRGPTTSKYTYILQVKLNIYMN 531
           P  + RN ++    +  GDG   +GL+ G T + Y  + ++ +  Y+N
Sbjct: 171 PFLAGRNNVIACAKHFVGDGGTEKGLSEGNTITSYEDLEKIHVAPYLN 218


>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
           protein 
          Length = 573

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 228 IDFFTIEVSTESHCGKYKRIKKMKFFVKTVGG 323
           + ++T +   ES   +Y R+K++KFF + V G
Sbjct: 209 LHWWTTDAEIESVLSQYGRVKEIKFFDERVSG 240


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,508,484
Number of Sequences: 28952
Number of extensions: 325982
Number of successful extensions: 783
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)