Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1179
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    33   0.063
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    26   5.5  

>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 32.7 bits (71), Expect = 0.063
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 809 HTIFPWNVNNKLCGCRARGPLHTQHYT 729
           H+I+ W V  + CGC   G LH Q  T
Sbjct: 356 HSIWSWGVELRYCGCLGLGSLHLQEQT 382


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +3

Query: 690 KFLLYYLICLVMF--SVVLRVEWSAGATSAELIVN 788
           KF+LY L  LV+F  SV+L +  SA   SA ++++
Sbjct: 2   KFILYVLASLVLFGLSVLLSLYSSANVYSATVMIS 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,629
Number of Sequences: 5004
Number of extensions: 48187
Number of successful extensions: 58
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)