Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1179
         (809 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ231606-1|ABA71712.1|   66|Drosophila melanogaster male accesso...    29   9.9  
AY070816-1|AAL48438.1|   77|Drosophila melanogaster AT24650p pro...    29   9.9  
AE014296-1103|ABI31238.1|   77|Drosophila melanogaster CG33943-P...    29   9.9  

>DQ231606-1|ABA71712.1|   66|Drosophila melanogaster male accessory
           gland protein protein.
          Length = 66

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 696 LLYYLICLVMFSVVLRVEWSAGATSAEL 779
           L +YLICL++  V+    WSAGA S +L
Sbjct: 6   LKFYLICLLVICVI---GWSAGAPSPQL 30


>AY070816-1|AAL48438.1|   77|Drosophila melanogaster AT24650p
           protein.
          Length = 77

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 696 LLYYLICLVMFSVVLRVEWSAGATSAEL 779
           L +YLICL++  V+    WSAGA S +L
Sbjct: 17  LKFYLICLLVICVI---GWSAGAPSPQL 41


>AE014296-1103|ABI31238.1|   77|Drosophila melanogaster CG33943-PA
           protein.
          Length = 77

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 696 LLYYLICLVMFSVVLRVEWSAGATSAEL 779
           L +YLICL++  V+    WSAGA S +L
Sbjct: 17  LKFYLICLLVICVI---GWSAGAPSPQL 41


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,754,225
Number of Sequences: 53049
Number of extensions: 464960
Number of successful extensions: 891
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3798466620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)