Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1178
         (752 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     26   0.37 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   3.5  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.5  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    22   6.0  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    22   6.0  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 654 KRHLRQYQKWKLLHNGRNYKNHLNTTLF*PKPH 556
           +R + + +K  LL NG N+  HL+   F   PH
Sbjct: 89  RRDMSRLEKSPLLANGYNHSPHLSHMQFMQLPH 121


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
 Frame = -1

Query: 104 KATWAGDISNYVYIRLY-----FWINYCNFQYH 21
           K T A   + YV +RL      FW+ +C+F +H
Sbjct: 644 KDTIAVPNNGYVVLRLRANNPGFWLFHCHFLFH 676


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 250 FNQYQILAHVFLSFFS 203
           FN YQ LAH    FF+
Sbjct: 516 FNNYQSLAHYLRVFFT 531


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 398 WATSFFPSKSIRFKFCIKSSNKLVLYISCAN 306
           W + +  +K    +  +  +NKLVL + C N
Sbjct: 152 WLSRYSWAKVFLVEHILVQTNKLVLALECNN 182


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 398 WATSFFPSKSIRFKFCIKSSNKLVLYISCAN 306
           W + +  +K    +  +  +NKLVL + C N
Sbjct: 152 WLSRYSWAKVFLVEHILVQTNKLVLALECNN 182


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,014
Number of Sequences: 336
Number of extensions: 3573
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)