Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1178
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    91   2e-19
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    28   1.2  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    27   3.8  

>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 40/81 (49%), Positives = 58/81 (71%)
 Frame = +3

Query: 510 EIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKI 689
           E+A   G++LREC+R+EAL +++L S DF+ FF  ++ S+FD+ASDAFSTFK +L  HK 
Sbjct: 134 EVAFTAGSILRECSRHEALNEVLLNSRDFWTFFSLIQASSFDMASDAFSTFKSILLNHKS 193

Query: 690 LCAEFLEANYDKVFSHYQRLL 752
             AEF+  ++D+ F  Y  LL
Sbjct: 194 QVAEFISYHFDEFFKQYTVLL 214



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 29/85 (34%), Positives = 49/85 (57%)
 Frame = +1

Query: 256 LYGTSDAEPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGT 435
           L GT++ EP  D+ V+ L+ ++Y             +++FE KKD   +F+ +LRR + +
Sbjct: 50  LCGTAEVEPDADL-VSDLSFQIYQSNLPFLLVRYLPKLEFESKKDTGLIFSALLRRHVAS 108

Query: 436 RSPTVEYICTKPEILFTLMSGYEHQ 510
           R PTV+Y+   P+I   L+S Y +Q
Sbjct: 109 RYPTVDYMLAHPQIFPVLVSYYRYQ 133


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 504 TSEIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTF 662
           TS +A NC  +L +  RY   A I +  D   +   + +   F I  D  ST+
Sbjct: 120 TSFVAKNCSVVLEDQKRYRIRASINM--DSIIDITVHQDAPPFKIGEDGNSTY 170


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 26/90 (28%), Positives = 40/90 (44%)
 Frame = -1

Query: 407 LKTWATSFFPSKSIRFKFCIKSSNKLVLYISCANCATMISVCGSASDVP*SYF*SVPNSC 228
           LKT      P+K     +C  S  +  LY    N A    +  S +      F S+ N C
Sbjct: 680 LKTEVEKQMPAKYEHVVYCQLSKRQRFLYDDFINRARTREILASGN------FMSIIN-C 732

Query: 227 SRLLELFQLSYHPSLKPSRHLLTI*QLRRA 138
             L++L ++  HP+L   R ++T   LRR+
Sbjct: 733 --LMQLRKVCNHPNLHEERPIVTSFALRRS 760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,456
Number of Sequences: 5004
Number of extensions: 56391
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)