Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1178
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1492 + 26960876-26960986,26961910-26962074,26962153-269622... 100 1e-21
07_03_1064 + 23700662-23700787,23701709-23701870,23701983-237021... 93 3e-19
03_01_0512 - 3849275-3849333,3849429-3849531,3849610-3849654,384... 77 2e-14
03_03_0021 + 13808274-13808384,13809036-13809200,13809249-138092... 35 0.080
11_06_0305 + 22209640-22209736,22212679-22212941,22213444-222135... 28 9.2
>07_03_1492 +
26960876-26960986,26961910-26962074,26962153-26962271,
26962559-26962633,26963063-26963156,26963239-26963298,
26963474-26963539,26963622-26963720,26964027-26964035
Length = 265
Score = 100 bits (239), Expect = 1e-21
Identities = 46/81 (56%), Positives = 60/81 (74%)
Frame = +3
Query: 510 EIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKI 689
E+A NCG MLREC +Y LAK +L S F FF+YVE+S FDIASDA +TFK+LLT+H+
Sbjct: 137 EVALNCGNMLRECIKYPTLAKYILESSSFELFFQYVELSNFDIASDALNTFKDLLTKHEA 196
Query: 690 LCAEFLEANYDKVFSHYQRLL 752
+EFL ++Y++ F Y RLL
Sbjct: 197 AVSEFLCSHYEQFFELYTRLL 217
Score = 31.5 bits (68), Expect = 0.74
Identities = 25/99 (25%), Positives = 48/99 (48%)
Frame = +1
Query: 256 LYGTSDAEPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGT 435
L G + EP + ++ Q+A E+ + +EG+KD+A ++ +LR+++
Sbjct: 53 LSGDGEVEPNQEQVL-QIALEICKEDVLSLFVQNMPSLGWEGRKDLAHCWSILLRQKVDE 111
Query: 436 RSPTVEYICTKPEILFTLMSGYEHQR*LPTVARCCENVL 552
V+YI ++L L+ Y++ VA C N+L
Sbjct: 112 AYCCVQYIENHFDLLDFLVVCYKNLE----VALNCGNML 146
>07_03_1064 +
23700662-23700787,23701709-23701870,23701983-23702101,
23703128-23703202,23704387-23704480,23704856-23704915,
23705083-23705151,23705457-23705555,23706201-23706245,
23706339-23706441,23706665-23706723
Length = 336
Score = 92.7 bits (220), Expect = 3e-19
Identities = 45/82 (54%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 510 EIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKI 689
+IA + G+MLREC R++++A+ +L SD FF Y+++ FDIASDA +TFKELLTRHK
Sbjct: 141 DIALHYGSMLRECIRHQSIARYVLESDHMKKFFDYIQLPNFDIASDASATFKELLTRHKA 200
Query: 690 LCAEFLEANYDKVFSHYQ-RLL 752
AEFL NYD FS + RLL
Sbjct: 201 TVAEFLSKNYDWFFSEFNTRLL 222
Score = 55.2 bits (127), Expect = 5e-08
Identities = 28/84 (33%), Positives = 46/84 (54%)
Frame = +1
Query: 256 LYGTSDAEPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGT 435
LYG ++EP T+ V QL QE + +++ E +KD QV N+ R+Q+ +
Sbjct: 57 LYGNGESEPVTEACV-QLTQEFFRENTLRLLIICLPKLNLETRKDATQVVANLQRQQVSS 115
Query: 436 RSPTVEYICTKPEILFTLMSGYEH 507
+ EY+ ++L TL+SGYE+
Sbjct: 116 KIVASEYLEANKDLLDTLISGYEN 139
>03_01_0512 -
3849275-3849333,3849429-3849531,3849610-3849654,
3849876-3849974,3850078-3850146,3850251-3850310,
3850540-3850633,3850875-3850949,3851101-3851219,
3851433-3851600,3852743-3852928
Length = 358
Score = 76.6 bits (180), Expect = 2e-14
Identities = 36/81 (44%), Positives = 49/81 (60%)
Frame = +3
Query: 510 EIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKI 689
+IA + +LR+C R++ A+ +L S FF Y++ F+IASDAF TFKELLTRH+
Sbjct: 163 DIAIHYSAILRDCIRHQVAARYVLESQHMKKFFDYIQYPDFNIASDAFKTFKELLTRHRS 222
Query: 690 LCAEFLEANYDKVFSHYQRLL 752
AEF NYD F + L
Sbjct: 223 SAAEFFSNNYDWFFPEFNSKL 243
Score = 44.8 bits (101), Expect = 7e-05
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 LYGTSDAEPQTDIIVAQLAQEMYXXXXXXXXXXXXXR--IDFEGKKDVAQVFNNVLRRQI 429
LYG +A+P D +QL +E + +D E +KDV QV N+LR+++
Sbjct: 77 LYGNGEADP-VDEACSQLTKEFFKENTNSLHLLVVCLPYMDLETQKDVTQVTANLLRQKV 135
Query: 430 GTRSPTVEYICTKPEILFTLMSGYEH 507
R +Y+ ++L LMSGY++
Sbjct: 136 DYRMVASDYLEENQDLLDVLMSGYDN 161
>03_03_0021 +
13808274-13808384,13809036-13809200,13809249-13809278,
13809279-13809397,13809696-13809770,13812071-13812146,
13813224-13813289,13813364-13813462,13814072-13814174,
13814338-13814411
Length = 305
Score = 34.7 bits (76), Expect = 0.080
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 510 EIASNCGTMLRECARYEALAKIML 581
++A NCG MLREC +Y L K+ +
Sbjct: 147 DVALNCGNMLRECIKYPTLTKVRI 170
>11_06_0305 +
22209640-22209736,22212679-22212941,22213444-22213530,
22214866-22214937,22215729-22215793,22215918-22216050,
22216397-22216477,22216599-22216688,22217954-22218103
Length = 345
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 134 EKPCGVVRSLKDAVTALE-RGDK 199
EKPC SLKD++TA+ GDK
Sbjct: 110 EKPCACSGSLKDSITAISYDGDK 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,190,727
Number of Sequences: 37544
Number of extensions: 317754
Number of successful extensions: 713
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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