Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1178
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16724| Best HMM Match : HEAT (HMM E-Value=1.1)                     136   2e-32
SB_58179| Best HMM Match : zf-C2H2 (HMM E-Value=4.7e-19)               29   3.1  
SB_30357| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)                   28   9.4  

>SB_16724| Best HMM Match : HEAT (HMM E-Value=1.1)
          Length = 197

 Score =  136 bits (328), Expect = 2e-32
 Identities = 63/83 (75%), Positives = 69/83 (83%)
 Frame = +3

Query: 504 TSEIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRH 683
           T EIA NCG MLREC RYE LAKI+L  D FYNFF YVE+STFDIASDAF+TFKE LTRH
Sbjct: 4   TPEIALNCGMMLRECLRYELLAKIILLDDRFYNFFNYVEMSTFDIASDAFATFKENLTRH 63

Query: 684 KILCAEFLEANYDKVFSHYQRLL 752
           KI+CAEFLE NYDK F+ Y +LL
Sbjct: 64  KIMCAEFLEKNYDKFFNSYGKLL 86


>SB_58179| Best HMM Match : zf-C2H2 (HMM E-Value=4.7e-19)
          Length = 249

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
 Frame = -1

Query: 350 IKSSNKLVLYISCANCATMISVCGSASDVP*SYF*SVPNSCSRLLELFQLSY----HPSL 183
           + S  + V  +SC  C  + + C S      + F S P  C    E F LS+    H  +
Sbjct: 130 VTSFKRAVNSMSCGKCDEVFTQCSSLQTHVCALFPSKPYQCGHCQENFALSHELRAHVVI 189

Query: 182 KPSRHLLTI*QLRRAFLRLTKERHSIKA 99
             SR         RAF  +T   + I+A
Sbjct: 190 HQSRKPFKCGYCSRAFSGVTTLTNHIRA 217


>SB_30357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 128 VSEKPCGVVRSLKDAVTALERGDKKAEKAQEDVSKN 235
           VS + C     ++ A  + E+G KKAEK +ED  K+
Sbjct: 52  VSSECCFATDEIERARKSTEKGCKKAEKEKEDREKD 87


>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
          Length = 1110

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 374 LKEKKMWPKFSTMSLDVKLEHDLQQ*STFVPSLKYYL 484
           L E+   PK     L +  E+DLQQ  T VP L  YL
Sbjct: 460 LTEEDKPPKEFDQRLPIITENDLQQLQTSVPELSEYL 496


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,895,650
Number of Sequences: 59808
Number of extensions: 394959
Number of successful extensions: 993
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)