Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1178
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53337-5|AAP40522.1|  377|Caenorhabditis elegans Hypothetical pr...   112   2e-25
U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical pr...   112   2e-25
Z99277-3|CAB16486.1|  338|Caenorhabditis elegans Hypothetical pr...   103   1e-22
AF386744-1|AAL57289.1|  384|Caenorhabditis elegans PAF-1 protein.      29   2.7  
AF039716-8|AAB96738.1|  384|Caenorhabditis elegans Paf-acetylhyd...    29   2.7  
Z82059-11|CAC42351.2|  591|Caenorhabditis elegans Hypothetical p...    28   8.2  
Z82059-10|CAB04878.2|  589|Caenorhabditis elegans Hypothetical p...    28   8.2  

>U53337-5|AAP40522.1|  377|Caenorhabditis elegans Hypothetical
           protein R02E12.2b protein.
          Length = 377

 Score =  112 bits (270), Expect = 2e-25
 Identities = 52/81 (64%), Positives = 62/81 (76%)
 Frame = +3

Query: 510 EIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKI 689
           +IA  CG MLRE  R++ LAKI+LYSD FY FF YV+   FDI+SDAFSTFKEL TRHK 
Sbjct: 151 DIALTCGLMLRESIRHDHLAKIILYSDVFYTFFLYVQSEVFDISSDAFSTFKELTTRHKA 210

Query: 690 LCAEFLEANYDKVFSHYQRLL 752
           + AEFL++NYD  F+ YQ LL
Sbjct: 211 IIAEFLDSNYDTFFAQYQNLL 231



 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 47/97 (48%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
 Frame = +1

Query: 256 LYGTSDAEPQTDIIV--AQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQI 429
           +YG   AEP ++ +V  AQLAQE+Y             + +FE KKDV Q+FNN+LRRQI
Sbjct: 64  IYGNDSAEPSSEHVVQVAQLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFNNLLRRQI 123

Query: 430 GTRSPTVEYICTKPEILFTLMSGYEHQR*LPTVARCC 540
           GTRSPTVEY+  +PEIL  L+ GY     +P +A  C
Sbjct: 124 GTRSPTVEYLGARPEILIQLVQGYS----VPDIALTC 156



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 13/53 (24%)
 Frame = +2

Query: 134 EKPCGVVRSLKDAVTALER-------------GDKKAEKAQEDVSKNLVLIKN 253
           + P  VV++L++ +T L++              DKK +KA ++VSKN+ +IK+
Sbjct: 10  KSPADVVKTLREVLTILDKLPPPKLDKDGNIQSDKKYDKALDEVSKNVAMIKS 62


>U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical
           protein R02E12.2a protein.
          Length = 636

 Score =  112 bits (270), Expect = 2e-25
 Identities = 52/81 (64%), Positives = 62/81 (76%)
 Frame = +3

Query: 510 EIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKI 689
           +IA  CG MLRE  R++ LAKI+LYSD FY FF YV+   FDI+SDAFSTFKEL TRHK 
Sbjct: 410 DIALTCGLMLRESIRHDHLAKIILYSDVFYTFFLYVQSEVFDISSDAFSTFKELTTRHKA 469

Query: 690 LCAEFLEANYDKVFSHYQRLL 752
           + AEFL++NYD  F+ YQ LL
Sbjct: 470 IIAEFLDSNYDTFFAQYQNLL 490



 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 47/97 (48%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
 Frame = +1

Query: 256 LYGTSDAEPQTDIIV--AQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQI 429
           +YG   AEP ++ +V  AQLAQE+Y             + +FE KKDV Q+FNN+LRRQI
Sbjct: 323 IYGNDSAEPSSEHVVQVAQLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFNNLLRRQI 382

Query: 430 GTRSPTVEYICTKPEILFTLMSGYEHQR*LPTVARCC 540
           GTRSPTVEY+  +PEIL  L+ GY     +P +A  C
Sbjct: 383 GTRSPTVEYLGARPEILIQLVQGYS----VPDIALTC 415



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 13/53 (24%)
 Frame = +2

Query: 134 EKPCGVVRSLKDAVTALER-------------GDKKAEKAQEDVSKNLVLIKN 253
           + P  VV++L++ +T L++              DKK +KA ++VSKN+ +IK+
Sbjct: 269 KSPADVVKTLREVLTILDKLPPPKLDKDGNIQSDKKYDKALDEVSKNVAMIKS 321


>Z99277-3|CAB16486.1|  338|Caenorhabditis elegans Hypothetical
           protein Y53C12A.4 protein.
          Length = 338

 Score =  103 bits (248), Expect = 1e-22
 Identities = 45/80 (56%), Positives = 61/80 (76%)
 Frame = +3

Query: 510 EIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKI 689
           +IA  CG+MLRE  R+E LA+I+LYS+ F  FF +V+   FDIA+DAFSTFK+L+T+HK 
Sbjct: 141 DIALTCGSMLREAVRHEHLARIVLYSEYFQRFFVFVQSDVFDIATDAFSTFKDLMTKHKN 200

Query: 690 LCAEFLEANYDKVFSHYQRL 749
           +CAE+L+ NYD+ F  Y  L
Sbjct: 201 MCAEYLDNNYDRFFGQYSAL 220



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 49/99 (49%), Positives = 62/99 (62%)
 Frame = +1

Query: 256 LYGTSDAEPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGT 435
           +YG+   EP  +  V QLAQE+Y             + +FE KKDVA VFNN+LRRQIGT
Sbjct: 57  IYGSDANEPNNEQ-VTQLAQEVYNANVLPMLIKHLHKFEFECKKDVASVFNNLLRRQIGT 115

Query: 436 RSPTVEYICTKPEILFTLMSGYEHQR*LPTVARCCENVL 552
           RSPTVEY+  +PEIL TL+ GYE     P +A  C ++L
Sbjct: 116 RSPTVEYLAARPEILITLLLGYEQ----PDIALTCGSML 150


>AF386744-1|AAL57289.1|  384|Caenorhabditis elegans PAF-1 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 388 DVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTL 489
           D   VF N L +Q G   PT  Y+C +  I  TL
Sbjct: 317 DFPFVFPNWLAKQFGVHGPTEPYLCMQSAIELTL 350


>AF039716-8|AAB96738.1|  384|Caenorhabditis elegans
           Paf-acetylhydrolase protein 1 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 388 DVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTL 489
           D   VF N L +Q G   PT  Y+C +  I  TL
Sbjct: 317 DFPFVFPNWLAKQFGVHGPTEPYLCMQSAIELTL 350


>Z82059-11|CAC42351.2|  591|Caenorhabditis elegans Hypothetical
           protein T27E9.4b protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/68 (27%), Positives = 37/68 (54%)
 Frame = +3

Query: 534 MLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFLEA 713
           M     +++ +AKI LY+DD  +F + V++   ++   ++S F EL ++ + LC   L  
Sbjct: 1   MFASDVKHDKIAKIPLYTDDDLDFIK-VDILD-EMYKKSYSIFNELRSKCQ-LCDVALLV 57

Query: 714 NYDKVFSH 737
              K+ +H
Sbjct: 58  ENRKLSAH 65


>Z82059-10|CAB04878.2|  589|Caenorhabditis elegans Hypothetical
           protein T27E9.4a protein.
          Length = 589

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/68 (27%), Positives = 37/68 (54%)
 Frame = +3

Query: 534 MLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFLEA 713
           M     +++ +AKI LY+DD  +F + V++   ++   ++S F EL ++ + LC   L  
Sbjct: 1   MFASDVKHDKIAKIPLYTDDDLDFIK-VDILD-EMYKKSYSIFNELRSKCQ-LCDVALLV 57

Query: 714 NYDKVFSH 737
              K+ +H
Sbjct: 58  ENRKLSAH 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,767,745
Number of Sequences: 27780
Number of extensions: 309952
Number of successful extensions: 810
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)