Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1178
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    24   1.8  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   4.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.1  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 624 KLLHNGRNYKNHLNTTLF 571
           K +HN  NY N+ N  L+
Sbjct: 310 KTIHNNNNYNNYNNKKLY 327


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 624 KLLHNGRNYKNH 589
           K +HN  NYKN+
Sbjct: 321 KTIHNNNNYKNY 332


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 146  GVVRSLKDAVTALERGDKKAEKAQEDVSKNLVL 244
            G    +KD V  ++RG+K     Q+ V  +++L
Sbjct: 1302 GATSIIKDCVEDMKRGNKILRTCQKAVVLSMLL 1334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,248
Number of Sequences: 438
Number of extensions: 3863
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)