Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1177
         (407 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    24   0.66 
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    24   0.66 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   0.87 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   3.5  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    20   8.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   8.1  

>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 23.8 bits (49), Expect = 0.66
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 200 LPASAKSRVISPSLISDPWIFKSFNS*GLFKLIQLWD 90
           LP      + +  +   PWI    NS GL+ + +++D
Sbjct: 297 LPTHPYQMIKNQQVYDVPWIVSFTNSEGLYAINEIYD 333


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 23.8 bits (49), Expect = 0.66
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 200 LPASAKSRVISPSLISDPWIFKSFNS*GLFKLIQLWD 90
           LP      + +  +   PWI    NS GL+ + +++D
Sbjct: 297 LPTHPYQMIKNQQVYDVPWIVSFTNSEGLYAINEIYD 333


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 81  VKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRARKFFFRGF 230
           VK   + DE +   + K LKD    +E  R  PG GT++Q        GF
Sbjct: 80  VKKEDESDEEKPTTSFK-LKDSSSDSEDERPRPGGGTKYQTFSNLNISGF 128


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 96  QLDELEKALAVKGLKDPWIRNE 161
           QLDELEKA       D + R E
Sbjct: 231 QLDELEKAFERTQYPDIYTREE 252


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 174 HPGFGTRWQRARK 212
           HPGF  +  RAR+
Sbjct: 221 HPGFADKEYRARR 233


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 63  HYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQR 203
           H ++  V G+P +  +EK   V G     I +  +  HP     W+R
Sbjct: 502 HSARINVYGLPFVRSMEKQAIVAG--GTLIVHCPFAGHPVDSVVWER 546


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,631
Number of Sequences: 336
Number of extensions: 2023
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)